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AT3G48060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BAH domain ;TFIIS helical bundle-like domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48050.2); Has 5615 Blast hits to 3296 proteins in 434 species: Archae - 6; Bacteria - 1034; Metazoa - 2145; Fungi - 615; Plants - 463; Viruses - 15; Other Eukaryotes - 1337 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUITeggNOG:ENOG410Y6ZIEMBL:AL049658EMBL:CP002686
EnsemblPlants:AT3G48060EnsemblPlants:AT3G48060.1entrez:823961Gene3D:1.20.930.10
GeneID:823961GO:GO:0003677GO:GO:0003682GO:GO:0005634
GO:GO:0006351Gramene:AT3G48060.1hmmpanther:PTHR15141hmmpanther:PTHR15141:SF52
HOGENOM:HOG000083288InterPro:IPR001025InterPro:IPR003617InterPro:IPR017923
KEGG:ath:AT3G48060OMA:WERIMERPfam:PF01426Pfam:PF08711
Pfscan:PS51038Pfscan:PS51319PhylomeDB:Q9SU69PIR:T06677
PROSITE:PS51038PROSITE:PS51319Proteomes:UP000006548RefSeq:NP_190389.1
SMART:SM00439SMART:SM00509SMR:Q9SU69STRING:3702.AT3G48060.1
SUPFAM:SSF47676TAIR:AT3G48060UniGene:At.19774UniGene:At.48751
UniProt:Q9SU69
Coordinates (TAIR10) chr3:-:17743234..17748372
Molecular Weight (calculated) 172239.00 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.60
Length 1611 amino acids
Sequence (TAIR10)
(BLAST)
0001: MHGRVCERRH KSRRRHMLIS SSRVIATVEG GGSSCLSLSS STSFSKDGRK ISVGDCALFK PPQDCPPFIG IIRLIIAEEE DKLKLGVNWL YRPTELKLGK
0101: GILLEAEPNE LFYSFHEDNI PAASLLHPCK VAFLPRGVEL PSGISSFVCR RVYDVTNERL WWLTDQDYID DRQLEVDKLL CKTRSEMHTT LQQGGRSPKS
0201: MNSPTTSQPK DGIQNNNSLF SQSKGRKRER MDHGSESVKR ERSSRVDDSG SGPLRTESGL TSEILKFTEK GGLVDSEGVE KLVQLMLPER NEKKIDLVGR
0301: AILAGFVAAT NRFDCLSRFV QLRGLPVFDE WLQEVHKGKV GDGGSPKDSD RLVDDFLLVL LRALDKLPVN LNALQTCNIG KSVNHLRSHK NSEIGKKARS
0401: LVDTWKKRVE AEMDAKSGSN QGVSWPGRLS HGGRHSGGSA EANKTSSSHL HASKSVSVKQ QVENNLKCVA TSPGSTRSAP SPGSGGNVSK DGQQRNAGAG
0501: GVSEVLAAVK DEKSSSSSQS HNNSQSCSSE HAKTGNLCGK EDARSSTAGS TLKKCSGGSS RHRKSNNVFQ GSSSSASPRG AGLSRSFSSH RNVPSEKISQ
0601: SSLTSEKTLE VPLTEGSGNK LIVKLPRGRS PAQSVSGGSL EDPAPVNSRV SSPVHTVKQE LCDNNWREKN HSYRADVSSV LNAESWQSNE LKDILTGSQE
0701: ATGSPLVVAG DEREGALKDS DKASGNVKAT SSLGNEFKSG ERHGGTLSSM NALIESCVRY SETNASLAGS DDVGMNLLAS VAADEMSKSP VASPSVSQPP
0801: NSLMNENSTV GNNTKLMASD GLPHKQHQAV RPTLSNEQGE QHVSSSGTQL ESEIKNESKT GDRVKSSNSD TEDLQRFVDQ RLESNENSDG VVASPPLPTK
0901: VIKENILDDS DSGEVKDIKT DVKSEADCTS DLTKRVASSM LTECRDVSKM VDSVAVEHTP LEGVDDDKKE EKPPTALSSE LVKKVEEDVP VSSGISRGMD
1001: AVSIDRPITE MVNNIAFNHM DQKDIKKIKQ DFDTSVGAVK DASAGLDSSV TKGKVEPVEG NLENIEIMER YSGLRATPGL SPKEAEDLKR PNAPKTSDAD
1101: GDEAGECTSA ARDASSVSAA ASASAGSEMD ARVEFDLNEG FDGDDAQHGD SNNFSGSVVL TPTPLQPVNT LPFPVAPVSS GIPASITVAA AVKGPFVPPE
1201: DLLRYKGAVG WRGSAATSAF RPAEPRKAQD VLLSINNTST SDASTSAGKQ TRTFLDFDLN VPDERVLEDL ASQRSGNPTN CTSGITNNFD QVRSGVMGSA
1301: LDHSSGGLDL NKVDDLTDMN SYTMNSSHRL DSSFQQVKLP STGGRRDFDL NDGPVGDDAA VEPSMVLNQH SRSGLPSQPS LSGIRVNGEN MASFSTWFPA
1401: ANAYSAVSMP PIMPERGDQP FPMIATRGPQ RMLGPTTGVS SFSPEGYRGP VLSSSPAMPF QSTTFQYPVF PFGNSFPVTP ANFPGASTAH MDSSSSGRAY
1501: FPGVNSQILG PGVPVPSNYP RPYIVGLPNG GSNGGVLDNS AKWFRSGLDL NSGPGGHETE GRDESTLVSR QLSSSASVPS KEDQARMYQM SGGVLKRKEP
1601: EGGWDGYRQS L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)