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AT1G08620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 1159; Fungi - 446; Plants - 392; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Protein Annotations
BioGrid:22625EC:1.14.11.-eggNOG:ENOG410ISPGeggNOG:ENOG410XP0T
EMBL:AB493442EMBL:AC003981EMBL:CP002684EnsemblPlants:AT1G08620
EnsemblPlants:AT1G08620.1EnsemblPlants:AT1G08620.2entrez:837384GeneID:837384
Genevisible:C0SUT9GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0016568GO:GO:0046872GO:GO:0051213
Gramene:AT1G08620.1Gramene:AT1G08620.2hmmpanther:PTHR10694hmmpanther:PTHR10694:SF53
HOGENOM:HOG000241335InParanoid:C0SUT9InterPro:IPR003347InterPro:IPR003349
InterPro:IPR003888InterPro:IPR003889InterPro:IPR004198KEGG:ath:AT1G08620
KO:K11446OMA:GMNELETPaxDb:C0SUT9Pfam:C0SUT9
Pfam:PF02373Pfam:PF02375Pfam:PF02928Pfam:PF05964
Pfam:PF05965Pfscan:PS51183Pfscan:PS51184Pfscan:PS51542
Pfscan:PS51543PhylomeDB:C0SUT9PIR:G86218PIR:T00715
PRIDE:C0SUT9PRO:PR:C0SUT9PROSITE:PS51183PROSITE:PS51184
PROSITE:PS51542PROSITE:PS51543ProteinModelPortal:C0SUT9Proteomes:UP000006548
RefSeq:NP_001184940.1RefSeq:NP_172338.4SMART:SM00541SMART:SM00542
SMART:SM00545SMART:SM00558STRING:3702.AT1G08620.1SUPFAM:SSF51197
TAIR:AT1G08620tair10-symbols:PKDM7DUniGene:At.26858UniProt:C0SUT9
Coordinates (TAIR10) chr1:+:2737554..2743370
Molecular Weight (calculated) 135000.00 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.54
Length 1209 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGTELMRICV KEDSDDLPSV PPGFESYATF TLKRVVPATT SDKAKTPAIE SVSATEQAKM EVESDEAKAA RALRRRPWIN HSGCDDDGDC AANNDNAASQ
0101: NPDQNCDVKP ALPKGVVRGC EECKDCQKVT ARWHPDEARR PDLEDAPVFY PSEEEFEDTL NYIAKIRPEA EKYGICRIVP PPSWKPPCPL KEKQVWEGSK
0201: FTTRVQRVDK LQNRSSMKKI SKLPNQMRKK KRKCMKMGMD SVTNGMGDPC SASTGMNELE TFGFEPGPGF TLKDFQKYAD EFKAQYFKKS ETSTDDKCKV
0301: DNSIDCWEPA LEDVEGEYWR IVDKATEEIE VLYGADLETG VFGSGFPKIS SSHNASSSED KYAKSGWNLN NFPRLPGSLL KYEGSDISGV LVPWLYIGMC
0401: FSSFCWHVED HHLYSLNYMH WGAPKLWYGV GGKDAVKLEE AMRKHLPDLF EEQPDLLHKL VTQLSPSKLK TAGVPVHRCV QHAGEFVLTF PRAYHAGFNS
0501: GFNCAEAVNV APVDWLPHGQ IAIELYCQQG RKTSISHDKL LLGAAREVVK ADWELNLLRK NTVDNLRWKA FSAKDGILAK TLKARIDMER TRREFLCNSS
0601: LALKMHSNFD ATNERECCIC FFDLHLSAAG CRCSPEKYSC LTHVKELCSC PWVTKYFLFR YDIDELNVLV EAVEGKLSSV YRWARQDLGL ALSTDVSGSK
0701: MEIDEEGKVH KDPTPQTTAL SGKDLQLKVT SKEVSKELEK TSKLSHVNLL LKEKEEQITS SHCMKPVKEE TVCDSSDPNV SACQPSEGGI ICMTAVKSAS
0801: GKKNSQSLPN DVILLSDDEY DIPRKRGSVR RDAISSGKKL EIRERPTHVL ALEASAKIAA PICQREGDSL RDTRNTISLP TNDQKTMRRD VPSSTSHAEV
0901: NAEATGLTQD ICNRMATNSH GGGKPTSCKS KNSGGLAIVD VVDGTRSSSG TPSCSQNNSP DRFIRQKGPR IAKVVRRINC NVEPLSYGCV LSGKSWCSRR
1001: AIFPKGFRSR VKYINILDPT NMCFYISEIL DAGRNSPLFM VYLESNPSEV FVHMSPTRCW EMVRERVNQE ITKQHKAGKS DLPPLQPSGS PDGFEMFGYS
1101: SPAIVQAIEA LDVNRVCTDY WDSRPYSRPQ VQFPANPLLR EANTSGRSNV GNLQLNPGHH ISPTGINSIL KVLFKKASME ELSSLQEVLS ETNSDMVTEL
1201: VKEEIQNRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)