AT5G22760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PHD finger family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PHD finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Zinc finger, PHD-type (InterPro:IPR001965), DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: metalloendopeptidases;zinc ion binding;DNA binding (TAIR:AT5G35210.2); Has 3640 Blast hits to 3265 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 2369; Fungi - 398; Plants - 598; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7571635..7577662 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 175678.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1566 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEGKVAKPRG RPRKRPRPED LNGVSNRGKR PVFEVKVAVP RSLLGRYVLK DVDDSGVFLG KIVSYNTGLY RVEYEDGDFE DLETCYLRQL IIGDSYFDDE 0101: LRARRSKLDD FILKKDEKKK TDCLKNKGVE VPTCNSPSSV AEVESGYSSC GLPECEDDID PDFESMSPLV PPVELPSSSG TIGIPEEAVV YLLSVYGFLR 0201: SFSVQLYICP FGLDDFVGAL NFLGPNSLLD AVHVALMRAL KGHLERLSSE GSEVASKCLR CIDWSLLDAL TWPVYLVQYF AAMGHASGPL WRFFNEFVVE 0301: KEYCSSPVVM KLKILQILCD DVFDVADLRA EIDNREESEV GFDTDGVTAE LPENGPRRVH PRFAKTSASK EKELSEFVAV NHGISSLSDS KNWSSRYTDG 0401: GPNGDSPDLD ANSDECRLCG MDGTLLCCDG CPLAYHSRCI GVVKMYIPDG PWYCPECTIK KMGPTVVYKT SLRGAVYFGV DPHGRLFLGT CNLLLVLKIN 0501: VHADADIKYY NVTDIPKVVL VLLSATNHRL EYLYICKAIS QYWDLPGGVI SYLRTVETDL SHMQKEGGDE VSDIGEPDSA NSSSGNLIQN AVRLHPSASG 0601: YTGGPVLARS SGAQEKNLVA VSTQKGLSFK PHSYINHYTN GELAASAAAT LAILMSEETH EPDLHKFSNA KKAASSNILL QMKAFSIVAS SFFWPSPDKK 0701: EITRERCGWC HSCKLTSASR RGCMLNAAVT GATKSAMKIY SGLFPLKNGE GVLSRIAAYA LYLEESLRGL IAGPFLSESL RYQWRKKLEE ASTCKAMKAL 0801: LLELEENICS IALSSDWLKL MDDWLIELSI FQSAPVTVGA TQKRRPGRRK QRNQAENTAQ GSDDDSFTWW RGGKLSKIIL LKAVLSKPKI KKAAWQGGTK 0901: KFPEFNYGDG SYIPKRSRRS IWKAAVESSK NISQLALQVR YLDMNIRWSE LVRPEQNVQD VKGPETEATI FRNASICVKK IIDNKVRYGV VFGNQKHLPS 1001: RVMKNVIEVE KSEDRNEKYW FHEARVPLYL IKEYEESLHR VVHIPFIKKP SRKISKLQKR QLKASRANIF SYLASRRDNT EKCSCASCHL DVFLRDSITC 1101: STCQGFCHKE CTMSSQHTTG QLEILVTCKR CYLARARSQI NINHRQPTTP SVLINGQLQN AATSNTKTQI KRLNQQLPSS KTGDNASGVK QITPDFNLAP 1201: KSKHKTLSWG VIWRKKNLAD TGVSFRHENV MLAGRSDQPN LQPVCWICKL PYNPGLTYIH CTSCDMWYHI EAVKLEESKI PEVVGFKCCR CRRIRSPDCP 1301: YMDPKLKEQK QMKQVFFRRQ KHGQGNTGID SDSERMSEPK DSLPSTPSFL SEDTFVPEDD PLLVSVSKVE QITPNSLDVE WNEDGCVPGP QKLQVRRPVK 1401: REDTDGNNNL SYTEFTMHPE SMPVVKPEME PTFPVMEWDA SGNSNNMNEG ELMFDYEDME FEPQTYFSLT ELLTTDDSGQ CDGYGDDKDA SGITDNPNPQ 1501: VEAMEQCTSF LYENTIPCQI CKHVEPGPDL TCQTCNMTIH SHCSPWEEES TCIGGSWRCG RCREWL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)