AT1G68720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA arginine adenosine deaminase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the chloroplastic A-to-I tRNA editing enzyme. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tRNA arginine adenosine deaminase (TADA); FUNCTIONS IN: hydrolase activity, tRNA-specific adenosine deaminase activity, zinc ion binding; INVOLVED IN: tRNA wobble adenosine to inosine editing; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT5G28050.1); Has 24755 Blast hits to 21172 proteins in 2784 species: Archae - 180; Bacteria - 9362; Metazoa - 5238; Fungi - 1033; Plants - 641; Viruses - 59; Other Eukaryotes - 8242 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25804547..25808820 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 146572.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1307 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFNTYTNSLQ WPIRSRNQQD YCSLLPERSE SYKLSKAYTS SRCYCVSSRS SCCCCCSTPS SSSFVKPKVL INPGFVLYGV RQSTLIQWPS FQRRLLVGGG 0101: RLMGCEVYSS CDGIRRKNRS FKLRCLEESD ECCGGRSCSD DVEAMISFLS EELIDEERKW NLVSRVKEKK KVGNVRKVSV EGSNSYGNGR VSQRVKKPEG 0201: FGRRKEIKED VKLNERYDCE HCGRRKKSSE LESESRRGSK LVTGEYIGKS YRGDEEREVR PRRRKSSSCS SYYSLASSGE FESDTEDQEE DVEIYRENVR 0301: SSEKKVVDQS AKRLKSRKEA SQMHSRKKRD ESSTGVDSRY QKQIFEEGEN SNQAVTLNQR RRKKFSQTEN RVSESTGNYE EDMEIHEVHV NDAETSSQNQ 0401: KLFNEREDYR VHSIRNDSGN ENIESSQHQL KERLETRYSS EDRVSEMRRR TKYSSSQEEG INVLQNFPEV TNNQQPLVEE RISKQAGTRR TTEHISESSE 0501: IHDIDIRNTY VSQREDQIRN QEVHAGLVSG LQSERKQQDY HIEHNPLQTT QSDRTSVSVS HTSDAVRYTE IQRKSEKRLI GQGSTTAVQS DSKVEKNGAQ 0601: KEDSRLDHAN SKKDGQTTLG LQSYQSKLSE EASSSQSSLM ASRTKLQLVD LVSEEMQGSE TTLIPPSSQL VSRRSGQSYR TGGVSIQEIS HGTSESGYTT 0701: AFEHPRAGAS VNSQSAGELM GFTSHEDAMG SAHRLEQASE KYVGEFVKKA KHGVINPETE EQRAESNQLK RRDSRRSSGG SGAKGPSDEM WVTDSAQGTP 0801: HPGATEGNAA VGNAIFKRNG RSLWNVIADI ARLRWGSRAG SPDSSAKPAG RSSPNESVSS ATWFSGREHD GSSDDNTKGD KVLPQEAPSL HQVEVGQTSP 0901: RSQSEYPGTT KLKQRSERHE GVVSSPSSTI LEGGSVSNRM SSTSGNQIVG VDEEEGGNFE FRLPETALTE VPMKLPSRNL IRSPPIKESS ESSLTEASSD 1001: QNFTVGEGRR YPRMDAGQNP LLFPGRNLRS PAVMEPPVPR PRMVSGSSSL REQVEQQQPL SAKSQEETGS VSADSALIQR KLQRNKQVVR DSFEEWEEAY 1101: KVEAERRTVD EIFMREALVE AKKAADTWEV PVGAVLVHDG KIIARGYNLV EELRDSTAHA EMICIREGSK ALRSWRLADT TLYVTLEPCP MCAGAILQAR 1201: VNTLVWGAPN KLLGADGSWI RLFPGGEGNG SEASEKPPPP VHPFHPKMTI RRGVLESECA QTMQQFFQLR RKKKDKNSDP PTPTDHHHHH LPKLLNKMHQ 1301: VLPFFCL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)