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AT5G08450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPVPeggNOG:KOG4843EMBL:AY091073EMBL:AY122935
EMBL:CP002688EnsemblPlants:AT5G08450EnsemblPlants:AT5G08450.1EnsemblPlants:AT5G08450.2
EnsemblPlants:AT5G08450.3entrez:830744GeneID:830744GO:GO:0005634
GO:GO:0009737GO:GO:0009845GO:GO:0009908GO:GO:0016575
GO:GO:0080186GO:GO:1902074Gramene:AT5G08450.1Gramene:AT5G08450.2
Gramene:AT5G08450.3HOGENOM:HOG000082553IntAct:Q8RWV9InterPro:IPR004043
InterPro:IPR013951KEGG:ath:AT5G08450ncoils:CoilOMA:GSFEHDG
Pfam:PF08642PhylomeDB:Q8RWV9Proteomes:UP000006548RefSeq:NP_001031857.1
RefSeq:NP_196462.2RefSeq:NP_851033.1STRING:3702.AT5G08450.1SUPFAM:0039469
SUPFAM:SSF69848TAIR:AT5G08450UniGene:At.27862UniProt:Q8RWV9
Coordinates (TAIR10) chr5:-:2727970..2732572
Molecular Weight (calculated) 104158.00 Da
IEP (calculated) 7.49
GRAVY (calculated) -1.21
Length 918 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGVPKRSHE EGVTHPSSSS SVAKYPHEDS GSYPKSPHQP VTPPPAQVHH NHQQPHQHPQ SQSQSQPQPH LQALPHPHSH SHSHSPLAAA ASASAPYEVE
101: SRTVVKVARS EPRDGERRSP LPLVYRSPSL PTTVSSSDPH LTHAPVPMEP RDGAKDGREI RVESRENRSD GREIYGETKR EIQGPKGDRD VKFERSVDDF
201: SGKGNTGSYT RNDGREMYGE TKREIQGPKS DRDAKFERPG DDFSGKSNAG SYTRDTKFDR ENQNYNEQKG EIKMEKEGHA HLAWKEQKDY HRGKRVAEGS
301: TANVDPWVVS RGNPQGPTEV GPKDLSAPVE GSHLEGRETV GENKVDAKNE DRFKEKDKKR KELKHREWGD RDKDRNDRRV SVLVGSVMSE PKEIGREERE
401: SDRWERERME QKDRERNKEK DKDHIKREPR TGAEKEISQN EKELGEASAK PSEQEYVAPE QKKQNEPDNC EKDERETKEK RRERDGDSEA ERAEKRSRIS
501: EKESEDGCLE GEGATEREKD AFNYGVQQRK RALRPRGSPQ TTNRDNVRSR SQDNEGVQGK SEVSIVVYKV GECMQELIKL WKEYDLSHPD KSGDFANNGP
601: TLEVRIPAEH VTATNRQVRG GQLWGTDIYT DDSDLVAVLM HTGYCRPTAS PPPPTMQELR TTIRVLPSQD YYTSKLRNNV RSRAWGAGIG CSYRVERCYI
701: LKKGGGTIEL EPSLTHSSTV EPTLAPMAVE RSMTTRAAAS NALRQQRFVR EVTIQYNLCN EPWIKYSISI VADKGLKKPL FTSARLKKGE VLYLETHSCR
801: YELCFAGEKT IKAIQASQQQ SSHEAMETDN NNNKSQNHLT NGDKTDSDNS LIDVFRWSRC KKPLPQKLMR SIGFPLPADH IEVLEENLDW EDVQWSQTGV
901: WIAGKEYTLA RVHFLSPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)