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AT3G20740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization.
Computational
Description (TAIR10)
FERTILIZATION-INDEPENDENT ENDOSPERM (FIE); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: structural molecules (TAIR:AT1G79990.1); Has 16392 Blast hits to 11301 proteins in 524 species: Archae - 16; Bacteria - 2767; Metazoa - 5614; Fungi - 4038; Plants - 1850; Viruses - 0; Other Eukaryotes - 2107 (source: NCBI BLink).
Protein Annotations
BioGrid:6954DIP:DIP-31378NeggNOG:ENOG410XRQIeggNOG:KOG1034
EMBL:AB025629EMBL:AF129516EMBL:AK117114EMBL:BT005326
EMBL:CP002686EnsemblPlants:AT3G20740EnsemblPlants:AT3G20740.1entrez:821622
Gene3D:2.130.10.10GeneID:821622Genevisible:Q9LT47GO:GO:0003700
GO:GO:0005677GO:GO:0006349GO:GO:0006351GO:GO:0007275
GO:GO:0009409GO:GO:0016571GO:GO:0043078GO:GO:2000014
Gramene:AT3G20740.1hmmpanther:PTHR10253HOGENOM:HOG000005759InParanoid:Q9LT47
IntAct:Q9LT47InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472iPTMnet:Q9LT47KEGG:ath:AT3G20740
KO:K11462OMA:CTTLTHPPaxDb:Q9LT47Pfam:PF00400
Pfam:Q9LT47Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LT47
PRIDE:Q9LT47PRINTS:PR00320PRO:PR:Q9LT47PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9LT47Proteomes:UP000006548
RefSeq:NP_188710.1scanprosite:PS00678SMART:SM00320SMR:Q9LT47
STRING:3702.AT3G20740.1SUPFAM:SSF50978TAIR:AT3G20740tair10-symbols:FIE
tair10-symbols:FIE1tair10-symbols:FIS3UniGene:At.20884UniGene:At.74826
UniProt:Q9LT47
Coordinates (TAIR10) chr3:-:7249064..7252254
Molecular Weight (calculated) 41259.20 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.08
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)