AT4G39280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1); Has 10138 Blast hits to 10129 proteins in 3092 species: Archae - 343; Bacteria - 6159; Metazoa - 288; Fungi - 276; Plants - 100; Viruses - 0; Other Eukaryotes - 2972 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:18281641..18284831 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55795.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 485 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEAILGFL QNNEQITDSG QFSAEFNIDH NELVNVIKSL HGFRYIDVQD IKKETWILTD EGKKYAAEGS PEVQLFLAVP EEGSISKDEL QKKLAPAVFK 101: IGCSQAGKNK WVEMGKQVSR KVKDVEDKVK GQLLQIQQGK EFDKESINSL KARKLIVPQI WKGYSVKKGP NYAPERKKVA TDLTRENLQN WKELEFKEYN 201: FKAKGAPVDA GHLHALLKVR KQFKDIFVQM GFEEMPTNNY VESSFWNFDA LFQPQQHPAR DSHDTFFLKV PSTTRTLPED YVERVKRVHE SGGYGSRGYN 301: YDWKREEANK NLLRTHTTAV SSRMLYALAQ KPFVPKKYFS IDRVFRNEAV DRTHLAEFHQ IEGLICDRGL TLGDLIGVLE DFFSRLGMSK LRFKPAYNPY 401: TEPSMEIFSY HEGLGKWVEI GNSGMFRPEM LLPMGLPEDV RVIAWGLSLE RPTMILYGID NIRDLFGHKV DLDLIKRNPI CRIGI |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)