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AT5G24650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid envelope plastid outer membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:21296373 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: chloroplast, plasma membrane, vacuole, mitochondrial inner membrane presequence translocase complex, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif, type 1 (InterPro:IPR021129), Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT3G49560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFHEeggNOG:ENOG4111UT5EMBL:AB010068EMBL:AY070735
EMBL:AY142048EMBL:CP002688EMBL:DQ405267EnsemblPlants:AT5G24650
EnsemblPlants:AT5G24650.1entrez:832536GeneID:832536GO:GO:0005773
GO:GO:0005774GO:GO:0005886GO:GO:0009507GO:GO:0009536
GO:GO:0009941GO:GO:0015266GO:GO:0016021GO:GO:0033365
GO:GO:0071806Gramene:AT5G24650.1hmmpanther:PTHR14110hmmpanther:PTHR14110:SF6
HOGENOM:HOG000264396InterPro:IPR001660InterPro:IPR003397InterPro:IPR013761
KEGG:ath:AT5G24650OMA:FMGTLTNPfam:PF00536Pfam:PF02466
PhylomeDB:Q9FLT9Proteomes:UP000006548RefSeq:NP_197853.1STRING:3702.AT5G24650.1
SUPFAM:SSF47769TAIR:AT5G24650UniGene:At.22380UniProt:Q9FLT9
Coordinates (TAIR10) chr5:+:8437123..8438859
Molecular Weight (calculated) 27774.00 Da
IEP (calculated) 10.25
GRAVY (calculated) -0.13
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKDGEGDKK RETMAVMSLM KDQQNPIQQF QVKFKEIETG FKSWLSKQKL PVEAAVVTAM GGVQGAFIGG LMGTLSPEMP QAGIDPQAMA SLKQTQALVG
101: GPLVQARNFA AITGVNAGIA CVMKRIRGKE DLESAVVAAF GSGVAYSLVS AGLQGQPMNA ITTAAGFAVF QGVFFKLGER FSKPSVEDPY YTRGRSMLLK
201: LGLEKYEKNF KKGLLADPTL PLLTDSALRD VSIPPGPRLL ILDHIQRDPE LKGKRGSRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)