suba logo
AT5G20060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G52700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20060-MONOMERBioCyc:ARA:GQT-1171-MONOMERBioCyc:ARA:GQT-2587-MONOMEReggNOG:COG0400
eggNOG:KOG2112EMBL:AY088171EMBL:BT000428EMBL:BT001175
EMBL:CP002688EnsemblPlants:AT5G20060EnsemblPlants:AT5G20060.1EnsemblPlants:AT5G20060.2
EnsemblPlants:AT5G20060.3entrez:832128ESTHER:arath-AT5G20060Gene3D:3.40.50.1820
GeneID:832128GO:GO:0016787Gramene:AT5G20060.1Gramene:AT5G20060.2
Gramene:AT5G20060.3hmmpanther:PTHR10655hmmpanther:PTHR10655:SF34IntAct:Q8L9X1
InterPro:IPR003140InterPro:IPR029058KEGG:ath:AT5G20060KO:K06130
MEROPS:S09.A56OMA:WLPLHRNPfam:PF02230PhylomeDB:Q8L9X1
Proteomes:UP000006548RefSeq:NP_001031909.1RefSeq:NP_197506.1RefSeq:NP_974815.1
SMR:Q8L9X1STRING:3702.AT5G20060.1SUPFAM:SSF53474TAIR:AT5G20060
UniGene:At.23376UniProt:Q8L9X1
Coordinates (TAIR10) chr5:+:6776800..6779447
Molecular Weight (calculated) 26729.00 Da
IEP (calculated) 6.62
GRAVY (calculated) 0.00
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISGAAVGS GRNLRRAVEF GKTHVVRPKG KHQATIVWLH GLGDNGSSWS QLLETLPLPN IKWICPTAPS QPISLFGGFP STAWFDVVDI NEDGPDDMEG
101: LDVAAAHVAN LLSNEPADIK LGVGGFSMGA ATSLYSATCF ALGKYGNGNP YPINLSAIIG LSGWLPCAKT LAGKLEEEQI KNRAASLPIV VCHGKADDVV
201: PFKFGEKSSQ ALLSNGFKKV TFKPYSALGH HTIPQELDEL CAWLTSTLSL EG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)