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AT4G35950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
plasma membrane 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAC-like 6
Curator
Summary (TAIR10)
A member of ROP GTPases gene family-like. GTP binding protein Arac6.
Computational
Description (TAIR10)
RAC-like 6 (RAC6); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: Arabidopsis RAC-like 1 (TAIR:AT2G17800.2); Has 24191 Blast hits to 24163 proteins in 668 species: Archae - 9; Bacteria - 59; Metazoa - 12632; Fungi - 3489; Plants - 2692; Viruses - 20; Other Eukaryotes - 5290 (source: NCBI BLink).
Protein Annotations
BioGrid:15032DIP:DIP-29821NeggNOG:COG1100eggNOG:KOG0393
EMBL:AF031429EMBL:AF079487EMBL:AF107663EMBL:AF115473
EMBL:AK117209EMBL:AL022373EMBL:AL031986EMBL:AL161588
EMBL:AY087336EMBL:BT005217EMBL:CP002687EnsemblPlants:AT4G35950
EnsemblPlants:AT4G35950.1entrez:829750EvolutionaryTrace:Q9SBJ6Gene3D:3.40.50.300
GeneID:829750Genevisible:Q9SBJ6GO:GO:0005525GO:GO:0005634
GO:GO:0005737GO:GO:0007264GO:GO:0016020Gramene:AT4G35950.1
hmmpanther:PTHR24072hmmpanther:PTHR24072:SF179HOGENOM:HOG000233974InParanoid:Q9SBJ6
IntAct:Q9SBJ6InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT4G35950KO:K04392OMA:KERRFQPPaxDb:Q9SBJ6
PDB:3BWDPDBsum:3BWDPfam:PF00071Pfam:Q9SBJ6
Pfscan:PS51420PhylomeDB:Q9SBJ6PIR:T04705PRO:PR:Q9SBJ6
PROSITE:PS51420ProteinModelPortal:Q9SBJ6Proteomes:UP000006548Reactome:R-ATH-194840
Reactome:R-ATH-198203Reactome:R-ATH-392451Reactome:R-ATH-5666185RefSeq:NP_195320.1
SMR:Q9SBJ6STRING:3702.AT4G35950.1SUPFAM:SSF52540TAIR:AT4G35950
tair10-symbols:ARAC6tair10-symbols:ATRAC6tair10-symbols:ATROP5tair10-symbols:RAC2
tair10-symbols:RAC6tair10-symbols:ROP5TIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.2216UniProt:Q9SBJ6
Coordinates (TAIR10) chr4:-:17024051..17025514
Molecular Weight (calculated) 21572.10 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.07
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT VQGEELKKLI GAPAYIECSS KSQENVKGVF DAAIRVVLQP PKQKKKKNKA QKACSIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)