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AT4G36910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) family protein
Curator
Summary (TAIR10)
Has a cystathionine Beta-synthase domain.
Computational
Description (TAIR10)
LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2 (LEJ2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT4G34120.1); Has 8411 Blast hits to 7757 proteins in 1885 species: Archae - 1245; Bacteria - 5956; Metazoa - 278; Fungi - 143; Plants - 147; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink).
Protein Annotations
BioGrid:15125eggNOG:ENOG410IY0MeggNOG:ENOG4111TWYEMBL:AL161590
EMBL:AY085164EMBL:BT003835EMBL:BT005190EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G36910EnsemblPlants:AT4G36910.1entrez:829844
GeneID:829844Genevisible:O23193GO:GO:0009507GO:GO:0045454
Gramene:AT4G36910.1hmmpanther:PTHR11911hmmpanther:PTHR11911:SF109HOGENOM:HOG000187907
InParanoid:O23193IntAct:O23193InterPro:IPR000644KEGG:ath:AT4G36910
OMA:ENSMFPEPaxDb:O23193PDB:4GQVPDB:4GQW
PDBsum:4GQVPDBsum:4GQWPfam:O23193Pfam:PF00571
Pfscan:PS51371PhylomeDB:O23193PIR:H85435PRIDE:O23193
PRO:PR:O23193PROSITE:PS51371ProteinModelPortal:O23193Proteomes:UP000006548
RefSeq:NP_195409.1SMART:SM00116SMR:O23193STRING:3702.AT4G36910.1
SUPFAM:SSF54631TAIR:AT4G36910tair10-symbols:CDCP2tair10-symbols:LEJ2
UniGene:At.31287UniGene:At.65827UniProt:O23193
Coordinates (TAIR10) chr4:-:17391016..17393218
Molecular Weight (calculated) 25769.90 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.12
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)