AT3G53560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G37400.1); Has 1386 Blast hits to 1214 proteins in 325 species: Archae - 90; Bacteria - 682; Metazoa - 125; Fungi - 22; Plants - 131; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19859954..19860976 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38666.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 340 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLGKLQLH HQPFHLSFTH TSSSTFPKNL FKSSIQPISS LKSASIKASS SKFQNSITPL PKSTPFRLFK STCITLTTAA ALLLANLHLK SPAIAAPIAP 101: PPSVESKENV TLEEEERALD EHLITHPSDV DALRSLMEVK IKSRKLTEAV EVIDRLIKLE PEEKEWPVLK ANIFTYSGDL DLAKTGFEEI LAKDPLRVEA 201: YHGLLMAYSD AGLDLKEVES RIEEAMLKCK KENNQNDFRD FKLLVAQIRV IEGKHSEALK LYQELVKEEP RDFRPYLCQG IIYTLLKKKD KAEEQFDNFR 301: KLVPKNHPYR EYFMDNMIAT KLFSEKAQRE MAEEMAGSTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)