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AT2G04530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metallo-hydrolase/oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.
Computational
Description (TAIR10)
CPZ; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: tRNAse Z1 (TAIR:AT1G74700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G04530-MONOMERBRENDA:3.1.26.11EC:3.1.26.11eggNOG:COG1234
eggNOG:ENOG410IFYHEMBL:AC006951EMBL:AJ428988EMBL:AY099564
EMBL:BT001247EMBL:CP002685EnsemblPlants:AT2G04530EnsemblPlants:AT2G04530.1
entrez:814995Gene3D:3.60.15.10GeneID:814995Genevisible:Q8L633
GO:GO:0008033GO:GO:0009507GO:GO:0034414GO:GO:0042780
GO:GO:0042781GO:GO:0046872Gramene:AT2G04530.1hmmpanther:PTHR12553
hmmpanther:PTHR12553:SF37HOGENOM:HOG000238909InParanoid:Q8L633InterPro:IPR001279
KEGG:ath:AT2G04530KO:K00784ncoils:CoilOMA:PPCIKDD
PaxDb:Q8L633Pfam:PF12706Pfam:Q8L633PhylomeDB:Q8L633
PIR:E84458PRIDE:Q8L633PRO:PR:Q8L633ProteinModelPortal:Q8L633
Proteomes:UP000006548RefSeq:NP_178532.2SMR:Q8L633STRING:3702.AT2G04530.1
SUPFAM:SSF56281TAIR:AT2G04530tair10-symbols:CPZtair10-symbols:TRZ2
UniGene:At.43676UniProt:Q8L633
Coordinates (TAIR10) chr2:+:1576808..1578611
Molecular Weight (calculated) 39953.30 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.23
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLSSSFPIS PPKIFPSTKH HKPPVITHQL AAQIQSNRRH FVSPVKVSGY FSSISRAIEE EEEYRKARAA VNRKGVELES YAIEGISVGG HETCVIVPEL
101: KCVFDIGRCP SRAIQQKFLF ITHAHLDHIG GLPMYVASRG LYNLEPPKIF VPPSIKEDVE KLLEIHRTMG QVELNVELIP LAVGETYELR NDIVVRPFAT
201: HHVIPSQGYV IYSVRKKLQK QYAHLKGKQI EKIKKSGVEI TDTILSPEIA FTGDTTSEYM LDPRNADALR AKVLITEATF LDESFSTEHA QALGHTHISQ
301: IIENAKWIRS KTVLLTHFSS RYHVEEIREA VLKLQSKVSA KVIPLTEGFR SRYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)