AT2G31890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RAP | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RAP; CONTAINS InterPro DOMAIN/s: RAP domain (InterPro:IPR013584); Has 766 Blast hits to 576 proteins in 113 species: Archae - 0; Bacteria - 46; Metazoa - 118; Fungi - 18; Plants - 194; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13557100..13559715 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75683.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MECVVPFRRC FCLNPPETRH RIVNHNHRNL HISLSSSSFA SGILPLSNKK YRFVGPLAQR SSLHRRTDSL KHLPFSVNAS VIGNSEEEVE EEDDDGDWEA 101: EFLGEIDPLD IQPPKKRKKQ KNSKALEDTE GMDWCVRARK IALKSIEARG LSSRMAEVMP LKKKKKKKSK KVIVKKDKVK SKSIPEDDFD TEDEDLDFED 201: GFVEDKMGDL RKRVSSLAGG MFEEKKEKMK EQLAQRLSQF SGPSDRMKEI NLNKAIIEAQ TAEEVLEVTA ETIMAVAKGL SPSPLSPLNI ATALHRIAKN 301: MEKVSMMRTR RLAFARQREM SMLVALAMTC LPECSAQGIS NISWALSKIG GELLYLTEMD RVAEVATSKV GEFNSQNVAN IAGAFASMRH SAPELFAELS 401: KRASTIINTF KGQEIAQLLW SFASLYEPAD PLLESLDSAF KSSDQFKCYL TKEITNSDEV VDAEVSDDVS RSPALSFNRD QLGNIAWSYA VLGQVERPFF 501: ANIWNTLTTL EEQRLSEQYR EDVMFASQVY LVNQCLKLEC PHLQLSLCQE LEEKISRAGK TKRFNQKITS SFQKEVGRLL ISTGLDWAKE HDVDGYTVDV 601: ALVEKKVALE IDGPTHFSRN SGLPLGHTML KRRYVAAAGW KVVSLSLQEW EEHEGSHEQL EYLREILTGC I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)