AT3G12080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GTP-binding family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46668 Blast hits to 25884 proteins in 2974 species: Archae - 250; Bacteria - 36183; Metazoa - 387; Fungi - 453; Plants - 421; Viruses - 0; Other Eukaryotes - 8974 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3847851..3851980 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73129.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 663 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLLDSLTT RGFFTMPSIS RIYSPLASST SLTSSPSSSS SIIPSLSVLS YTHQHPHSSR FPFLVAATLD GSSAEEELDF EEFDQYAEDN FADDYSDDED 101: DSIDISVLEK EARDIVRDYA TTLSRELKIE DETIEGKETR RKGKRLAKNT QQIPEHLLQR VAIVGRPNVG KSALFNRLVG ENRAIVVDEP GVTRDRLYGR 201: SYWGDQEFVV VDTGGVMTVS KSPSGVMEEL NVSTTIGMEG IPLSSREAAI ARMPSMIEKQ ATAAVDESAV IIFVVDGQAG PSGADVEIAD WLRKYYSHKY 301: IILAVNKCES PRKGLMQASE FWSLGFTPIP ISALSGTGTG ELLDLVCSGL IKLEIMENIE EEEEENYIPA IAIIGRPNVG KSSILNALVR EDRTIVSPVS 401: GTTRDAIDAE FTGPDGEKFR LIDTAGIRKK SSVASSGSTT EAMSVNRAFR AIRRSDVVAL VIEAMACITE QDLKIAERIE REGKGCLVVV NKWDTIPNKN 501: QETAAHYEDD VREKLRSLKW APIVYSTAIT GHSVDNIVVA AATVQKERSR RLSTAILNQV IREAVAFKSP PRTRGGKRGR VYYCTQAAIR PPTFVFFVND 601: AKLFSDTYRR YMEKQLRTDA GFAGTPIRLL WRSRKRSDKN GGGGGTMRMA GLTRQRNLAT KRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)