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AT3G12080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24124904 (2013): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46668 Blast hits to 25884 proteins in 2974 species: Archae - 250; Bacteria - 36183; Metazoa - 387; Fungi - 453; Plants - 421; Viruses - 0; Other Eukaryotes - 8974 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1160eggNOG:ENOG410IU3HEMBL:BT046184EMBL:CP002686
EnsemblPlants:AT3G12080EnsemblPlants:AT3G12080.1entrez:820382ExpressionAtlas:B5X565
Gene3D:3.30.300.20Gene3D:3.40.50.300GeneID:820382GO:GO:0005525
GO:GO:0009507Gramene:AT3G12080.1HAMAP:MF_00195hmmpanther:PTHR11649
hmmpanther:PTHR11649:SF60HOGENOM:HOG000242861InterPro:IPR005225InterPro:IPR006073
InterPro:IPR015946InterPro:IPR016484InterPro:IPR027417InterPro:IPR031166
InterPro:IPR032859OMA:DVMGTPIPfam:PF01926Pfam:PF14714
Pfscan:PS51712PhylomeDB:B5X565PRINTS:PR00326PROSITE:PS51712
Proteomes:UP000006548RefSeq:NP_187815.2SMR:B5X565STRING:3702.AT3G12080.1
SUPFAM:SSF52540TAIR:AT3G12080tair10-symbols:emb2738TIGRfam:TIGR00231
TIGRfam:TIGR03594TIGRFAMs:TIGR00231TIGRFAMs:TIGR03594UniGene:At.21430
UniProt:B5X565
Coordinates (TAIR10) chr3:+:3847851..3851980
Molecular Weight (calculated) 73129.90 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.31
Length 663 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLDSLTT RGFFTMPSIS RIYSPLASST SLTSSPSSSS SIIPSLSVLS YTHQHPHSSR FPFLVAATLD GSSAEEELDF EEFDQYAEDN FADDYSDDED
101: DSIDISVLEK EARDIVRDYA TTLSRELKIE DETIEGKETR RKGKRLAKNT QQIPEHLLQR VAIVGRPNVG KSALFNRLVG ENRAIVVDEP GVTRDRLYGR
201: SYWGDQEFVV VDTGGVMTVS KSPSGVMEEL NVSTTIGMEG IPLSSREAAI ARMPSMIEKQ ATAAVDESAV IIFVVDGQAG PSGADVEIAD WLRKYYSHKY
301: IILAVNKCES PRKGLMQASE FWSLGFTPIP ISALSGTGTG ELLDLVCSGL IKLEIMENIE EEEEENYIPA IAIIGRPNVG KSSILNALVR EDRTIVSPVS
401: GTTRDAIDAE FTGPDGEKFR LIDTAGIRKK SSVASSGSTT EAMSVNRAFR AIRRSDVVAL VIEAMACITE QDLKIAERIE REGKGCLVVV NKWDTIPNKN
501: QETAAHYEDD VREKLRSLKW APIVYSTAIT GHSVDNIVVA AATVQKERSR RLSTAILNQV IREAVAFKSP PRTRGGKRGR VYYCTQAAIR PPTFVFFVND
601: AKLFSDTYRR YMEKQLRTDA GFAGTPIRLL WRSRKRSDKN GGGGGTMRMA GLTRQRNLAT KRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)