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AT1G12770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata.
Computational
Description (TAIR10)
embryo defective 1586 (EMB1586); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: plasmodesma organization, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: embryo, root, flower, shoot meristem; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753; Bacteria - 18819; Metazoa - 5837; Fungi - 4441; Plants - 2445; Viruses - 12; Other Eukaryotes - 6526 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1774-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0327
EMBL:AC012187EMBL:AC025417EMBL:AK175587EMBL:AK175711
EMBL:AK175751EMBL:AK175793EMBL:AK176044EMBL:AK176194
EMBL:AK226229EMBL:AK229878EMBL:AK230085EMBL:AY062618
EMBL:AY114691EMBL:CP002684EnsemblPlants:AT1G12770EnsemblPlants:AT1G12770.1
entrez:837833Gene3D:3.40.50.300GeneID:837833GO:GO:0003723
GO:GO:0004004GO:GO:0005524GO:GO:0005739GO:GO:0009663
GO:GO:0010497GO:GO:0010501Gramene:AT1G12770.1hmmpanther:PTHR24031
hmmpanther:PTHR24031:SF303HOGENOM:HOG000239285InParanoid:Q8W4E1InterPro:IPR001650
InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417
KEGG:ath:AT1G12770OMA:ACEFTEGPaxDb:Q8W4E1Pfam:PF00270
Pfam:PF00271Pfam:Q8W4E1Pfscan:PS51192Pfscan:PS51194
Pfscan:PS51195PhylomeDB:Q8W4E1PIR:H86260PRIDE:Q8W4E1
PRO:PR:Q8W4E1PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195
ProteinModelPortal:Q8W4E1Proteomes:UP000006548RefSeq:NP_172737.2SMART:SM00487
SMART:SM00490SMR:Q8W4E1STRING:3702.AT1G12770.1SUPFAM:SSF52540
TAIR:AT1G12770tair10-symbols:EMB1586tair10-symbols:ISE1UniGene:At.47876
UniProt:Q8W4E1
Coordinates (TAIR10) chr1:+:4351888..4353543
Molecular Weight (calculated) 60721.80 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.24
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)