AT3G48500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN: RNA binding; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); Has 110 Blast hits to 108 proteins in 48 species: Archae - 0; Bacteria - 11; Metazoa - 5; Fungi - 14; Plants - 46; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17962209..17965408 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78818.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||||||||||
| Length | 668 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQICQTKLNF TFPNPTNPNF CKPKALQWSP PRRISLLPCR GFSSDEFPVD ETFLEKFGPK DKDTEDEARR RNWIERGWAP WEEILTPEAD FARKSLNEGE 101: EVPLQSPEAI EAFKMLRPSY RKKKIKEMGI TEDEWYAKQF EIRGDKPPPL ETSWAGPMVL RQIPPRDWPP RGWEVDRKEL EFIREAHKLM AERVWLEDLD 201: KDLRVGEDAT VDKMCLERFK VFLKQYKEWV EDNKDRLEEE SYKLDQDFYP GRRKRGKDYE DGMYELPFYY PGMVCEGTVT TLHLYQGAFV DIGGVHEGWV 301: PIKGNDWFWI RHFIKVGMHV IVEITAKRDP YRFRFPLELR FVHPNIDHMI FNKFDFPPIF HRDGDTNPDE IRRDCGRPPE PRKDPGSKPE EEGLLSDHPY 401: VDKLWQIHVA EQMILGDYEA NPAKYEGKKL SELSDDEDFD EQKDIEYGEA YYKKTKLPKV ILKTSVKELD LEAALTERQH HNKLMMEAKA RGEGYKIDKL 501: RRNIEMDEYD FLHWRRSLEE REALLRDISS RQALGLPLEE PGRYKPGSFF GKDQYDPTSA LYQYDYWGEP KNSEISKQER MKDAHNKSIV GKGNVWYDMS 601: YDDAIKQTIE KRKEGSTLAS QEEETESEEE EEDDDDFDDF DYSILSDESS IGYSEQQPLV NGTQVLTD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)