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AT3G27180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:21311031 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4717 Blast hits to 4707 proteins in 1568 species: Archae - 39; Bacteria - 4296; Metazoa - 92; Fungi - 26; Plants - 68; Viruses - 1; Other Eukaryotes - 195 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2265eggNOG:ENOG410II87EMBL:BT033031EMBL:CP002686
EnsemblPlants:AT3G27180EnsemblPlants:AT3G27180.1entrez:822337Gene3D:3.40.50.150
GeneID:822337GO:GO:0008173GO:GO:0031167Gramene:AT3G27180.1
hmmpanther:PTHR11061hmmpanther:PTHR11061:SF29HOGENOM:HOG000063733InterPro:IPR010280
InterPro:IPR029063KEGG:ath:AT3G27180OMA:QMAVTTHPfam:PF03602
Pfscan:PS51687PhylomeDB:B3DNP3PROSITE:PS51687Proteomes:UP000006548
RefSeq:NP_189354.2STRING:3702.AT3G27180.1SUPFAM:SSF53335TAIR:AT3G27180
UniGene:At.15UniGene:At.37101UniProt:B3DNP3
Coordinates (TAIR10) chr3:-:10027163..10030062
Molecular Weight (calculated) 57848.60 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.39
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNSSSLFSF GGRFPIINCR VSAPASAPFV ASVPLPPSTS SDSLACSLQC PHFQSCSGCT QEFNLHRPAV VDEASDFFKR YGVDDFTFDS CRLWGWRCRA
101: KLAVRGSSDN ALIGLYQEGT HTVVDIPECK SHHPNINAAI ELLREGIKVF DVVPFDEDQG TGDLRYVQMA VTTHSTNLRA PERYKNGKVQ VSLVWNSRNE
201: RSHNADKLQA LSTYLWRKGG PNSKFHLIHS VWANFQTSTN NIIFGNRWRH LLGERDFWEH VGGIDISLDP SSFGQANTRA FDSLLWKLHK YVPGGSSVAD
301: LYAGAGVIGL SLATSRKCSS VKCIEVNKEA RLSFEKTIQR LPNSLNCSIS WHHADASVNP LSWIIGSDVV VVDPPRRGLD ASLRQMLESV PSIEKRMRSS
401: SQSSSLNAKE EKRPWILRAK ELSIQAGNKQ TSEENNTLPQ RLIYISCGWE SFKEDCKSLL SSRAWELEKA HGFNFFPGTD SIEVLAVFKR RVASKKKKKS
501: GIKKVGIKKV RAKSQDSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)