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AT4G16800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12837943 (2003): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: enoyl-CoA hydratase activity, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (TAIR:AT5G43280.1); Has 38027 Blast hits to 38009 proteins in 2336 species: Archae - 484; Bacteria - 24986; Metazoa - 1599; Fungi - 771; Plants - 617; Viruses - 0; Other Eukaryotes - 9570 (source: NCBI BLink).
Protein Annotations
EC:4.2.1.17eggNOG:COG1024eggNOG:KOG1679EMBL:AJ288959
EMBL:AL161544EMBL:AY133698EMBL:CP002687EMBL:Z97342
EnsemblPlants:AT4G16800EnsemblPlants:AT4G16800.1entrez:827386Gene3D:1.10.12.10
Gene3D:3.90.226.10GeneID:827386GO:GO:0004300GO:GO:0005739
GO:GO:0006635GO:GO:0008233Gramene:AT4G16800.1gramene_pathway:4.2.1.116
gramene_pathway:4.2.1.17gramene_pathway:ILEUDEG-PWYgramene_pathway:PWY-3941gramene_pathway:PWY-5136
gramene_pathway:PWY-5138gramene_pathway:VALDEG-PWYhmmpanther:PTHR11941hmmpanther:PTHR11941:SF61
InParanoid:F4JML5InterPro:IPR001753InterPro:IPR014748InterPro:IPR018376
InterPro:IPR029045KEGG:ath:AT4G16800KO:K05607OMA:NSFSRGM
PaxDb:F4JML5Pfam:PF00378PIR:C71435PRIDE:F4JML5
PROSITE:PS00166ProteinModelPortal:F4JML5Proteomes:UP000006548Reactome:R-ATH-70895
RefSeq:NP_193413.2scanprosite:PS00166SMR:F4JML5STRING:3702.AT4G16800.1
SUPFAM:SSF52096TAIR:AT4G16800UniGene:At.28672UniPathway:UPA00659
UniProt:F4JML5
Coordinates (TAIR10) chr4:-:9454931..9457000
Molecular Weight (calculated) 32790.00 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.05
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFVKYLRRD NLLQLAGKPS LSRNYILQTC RTLIIETSPP EFVKLNRLSG SDSGIIEVNL DRPVTKNAIN KEMLKSLQNA FESIHQDNSA RVVMIRSLVP
101: GVFCAGADLK ERRTMSPSEV HTYVNSLRYM FSFIEALSIP TIAAIEGAAL GGGLEMALAC DLRICGENAV FGLPETGLAI IPGAGGTQRL SRLVGRSVSK
201: ELIFTGRKID AIEAANKGLV NICVTAGEAH EKAIEMAQQI NEKGPLAIKM AKKAIDEGIE TNMASGLEVE EMCYQKLLNT QDRLEGLAAF AEKRKPLYTG
301: N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)