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AT4G17190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : farnesyl diphosphate synthase 2
Curator
Summary (TAIR10)
Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.
Computational
Description (TAIR10)
farnesyl diphosphate synthase 2 (FPS2); CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 1 (TAIR:AT5G47770.1); Has 5842 Blast hits to 5835 proteins in 1891 species: Archae - 198; Bacteria - 3613; Metazoa - 226; Fungi - 204; Plants - 214; Viruses - 0; Other Eukaryotes - 1387 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17190-MONOMERBioCyc:ARA:GQT-443-MONOMERBioCyc:MetaCyc:AT4G17190-MONOMEREC:2.5.1.1
EC:2.5.1.10eggNOG:COG0142eggNOG:KOG0711EMBL:AL161545
EMBL:AY072207EMBL:AY117354EMBL:CP002687EMBL:L46349
EMBL:L46350EMBL:Z97343EnsemblPlants:AT4G17190EnsemblPlants:AT4G17190.1
entrez:827430ExpressionAtlas:Q43315Gene3D:1.10.600.10GeneID:827430
Genevisible:Q43315GO:GO:0004161GO:GO:0004337GO:GO:0005829
GO:GO:0006695GO:GO:0033384GO:GO:0045337GO:GO:0046872
gramene_pathway:2.5.1.1gramene_pathway:2.5.1.10gramene_pathway:PWY-5122gramene_pathway:PWY-5123
gramene_pathway:PWY2OL-4gramene_pathway:PWYQT-4449gramene_plant_reactome:1119472gramene_plant_reactome:1119569
gramene_plant_reactome:6874078gramene_plant_reactome:6874586gramene_plant_reactome:6875251gramene_plant_reactome:6875631
gramene_plant_reactome:6876607gramene_plant_reactome:6876688hmmpanther:PTHR11525HOGENOM:HOG000160912
InParanoid:Q43315InterPro:IPR000092InterPro:IPR008949iPTMnet:Q43315
KEGG:ath:AT4G17190KO:K00787OMA:VIDSYKMPaxDb:Q43315
Pfam:PF00348Pfam:Q43315PhylomeDB:Q43315PIR:S71182
PRIDE:Q43315PRO:PR:Q43315PROSITE:PS00444PROSITE:PS00723
ProteinModelPortal:Q43315Proteomes:UP000006548Reactome:R-ATH-191273Reactome:R-ATH-2426168
RefSeq:NP_193452.1scanprosite:PS00444scanprosite:PS00723SMR:Q43315
STRING:3702.AT4G17190.1SUPFAM:SSF48576TAIR:AT4G17190tair10-symbols:FPS2
UniGene:At.21195UniPathway:UPA00259UniPathway:UPA00260UniProt:Q43315
Coordinates (TAIR10) chr4:-:9648743..9650865
Molecular Weight (calculated) 39828.00 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.28
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)