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AT5G57440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
a member of haloacid dehalogenase-like hydrolase family
Computational
Description (TAIR10)
GS1; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphatase 1 (TAIR:AT4G25840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57440-MONOMERBioGrid:21093EC:3.1.3.21eggNOG:COG0637
eggNOG:KOG2914EMBL:AB011482EMBL:AY063967EMBL:AY084531
EMBL:AY114031EMBL:CP002688EnsemblPlants:AT5G57440EnsemblPlants:AT5G57440.1
entrez:835849Gene3D:3.40.50.1000GeneID:835849Genevisible:Q8VZP1
GO:GO:0000121GO:GO:0005739GO:GO:0006114GO:GO:0016311
GO:GO:0043136GO:GO:0046872Gramene:AT5G57440.1gramene_pathway:2.7.1.26
gramene_pathway:2.7.7.2gramene_pathway:RIBOSYN2-PWYhmmpanther:PTHR18901hmmpanther:PTHR18901:SF38
HOGENOM:HOG000248341InParanoid:Q8VZP1InterPro:IPR006439InterPro:IPR023214
KEGG:ath:AT5G57440KO:K17623OMA:IMGLQTRPaxDb:Q8VZP1
Pfam:PF13419Pfam:Q8VZP1PhylomeDB:Q8VZP1PRIDE:Q8VZP1
PRO:PR:Q8VZP1ProteinModelPortal:Q8VZP1Proteomes:UP000006548Reactome:R-ATH-73614
RefSeq:NP_568858.1SMR:Q8VZP1STRING:3702.AT5G57440.1SUPFAM:SSF56784
TAIR:AT5G57440tair10-symbols:GPP2tair10-symbols:GS1TIGRfam:TIGR01509
TIGRFAMs:TIGR01509UniGene:At.27125UniProt:Q8VZP1
Coordinates (TAIR10) chr5:-:23271518..23272900
Molecular Weight (calculated) 26781.10 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.25
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPAAVTAG RGSITHVIFD MDGLLLDTEK FYTEVQEIIL ARFNKKFDWS LKAKMMGRKA IEAARIFVEE SGISDSLSAE DFLVERESML QDLFPTSELM
101: PGASRLIKHL HVKNIPICIA TGTHTRHYDL KTQRHRELFS LMHHVVRGDD PEVKQGKPAP DGFLAAARRF KDGPVDSQKV LVFEDAPSGV LAAKNAGMNV
201: VMVPDPRLDI SHQDVADQII TSLVDFKPEE WGLPPFEDSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)