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AT3G20790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); Has 7400 Blast hits to 7400 proteins in 1508 species: Archae - 172; Bacteria - 5330; Metazoa - 189; Fungi - 322; Plants - 48; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0673eggNOG:KOG2742EMBL:AY092967EMBL:BT000079
EMBL:CP002686EnsemblPlants:AT3G20790EnsemblPlants:AT3G20790.1entrez:821627
Gene3D:3.40.50.720GeneID:821627GO:GO:0005829GO:GO:0016491
Gramene:AT3G20790.1hmmpanther:PTHR22604hmmpanther:PTHR22604:SF111HOGENOM:HOG000167784
InterPro:IPR000683InterPro:IPR004104InterPro:IPR016040KEGG:ath:AT3G20790
OMA:RMLVGCEPfam:PF01408Pfam:PF02894PhylomeDB:Q8RWP0
Proteomes:UP000006548RefSeq:NP_188715.2SMR:Q8RWP0STRING:3702.AT3G20790.1
SUPFAM:SSF51735SUPFAM:SSF55347TAIR:AT3G20790UniGene:At.48685
UniGene:At.66456UniProt:Q8RWP0
Coordinates (TAIR10) chr3:+:7268802..7271099
Molecular Weight (calculated) 38580.50 Da
IEP (calculated) 5.49
GRAVY (calculated) 0.02
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNPSSPGIA ILGAGIFVKT QYIPRLAEIS DLVDLKAIWS RTEESAKGAV EIARKHFPEV KCKWGDEGLN EIIQDSSIVG VAVVVAAETM VELSLKMLKA
101: GKHVLQEKPA AASISEIETA MSSYRNISAD SPCRPIWAVA ENYRFEPAFV ELKKLIAEIG DMMNVQLIIE GSMNSSNPYF SSSWRRNLSG GFILDMGVHY
201: IAGLRMLVGC EVTSVSATTT HVDKTLPGPD NITSNFQLEN GCSGVFVMVV SSRSPKILWR IVGLKGTVQL ERGVEGGRHG YMATIYGEGG TSRTIFYPFS
301: GVTEELKAFF NDISETSKEQ EPRLSYVEGA RDVAVLEAML ESGAKNGAVV PVNKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)