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AT1G53290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT3G14960.1); Has 1329 Blast hits to 1318 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 702; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
BioGrid:26988CAZy:GT31EC:2.4.1.-eggNOG:ENOG410XV5H
eggNOG:KOG2288EMBL:AC008007EMBL:AY128376EMBL:BT008831
EMBL:CP002684EnsemblPlants:AT1G53290EnsemblPlants:AT1G53290.1entrez:841763
ExpressionAtlas:Q8L7M1GeneID:841763Genevisible:Q8L7M1GO:GO:0000139
GO:GO:0005794GO:GO:0006486GO:GO:0008378GO:GO:0016021
Gramene:AT1G53290.1hmmpanther:PTHR11214hmmpanther:PTHR11214:SF108HOGENOM:HOG000238809
InParanoid:Q8L7M1InterPro:IPR002659KEGG:ath:AT1G53290ncoils:Coil
OMA:FIAISRRPANTHER:PTHR11214PaxDb:Q8L7M1Pfam:PF01762
Pfam:Q8L7M1PhylomeDB:Q8L7M1PhylomeDB:W8Q798PIR:C96573
PRIDE:Q8L7M1PRO:PR:Q8L7M1ProteinModelPortal:Q8L7M1Proteomes:UP000006548
RefSeq:NP_175736.2STRING:3702.AT1G53290.1TAIR:AT1G53290TMHMM:TMhelix
UniGene:At.44986UniPathway:UPA00378UniProt:Q8L7M1UniProt:W8Q798
Coordinates (TAIR10) chr1:+:19871353..19873251
Molecular Weight (calculated) 38778.90 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.24
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSPRKLFHA RSSLATRRST ALVVLTSLAI GIAGFTFGLA VILIPGLRLT GRNCLTNTPP KTVRVVWDVA GNSNGVVSGE KKRHKVMGFV GIQTGFGSAG
101: RRRSLRKTWM PSDPEGLRRL EESTGLAIRF MIGKTKSEEK MAQLRREIAE YDDFVLLDIE EEYSKLPYKT LAFFKAAYAL YDSEFYVKAD DDIYLRPDRL
201: SLLLAKERSH SQTYLGCLKK GPVFTDPKLK WYEPLSHLLG KEYFLHAYGP IYALSADVVA SLVALKNNSF RMFNNEDVTI GAWMLAMNVN HENHHILCEP
301: ECSPSSVAVW DIPKCSGLCN PEKRMLELHK QESCSKSPTL PSDDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)