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AT4G01040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 828 Blast hits to 823 proteins in 284 species: Archae - 0; Bacteria - 578; Metazoa - 178; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQB6eggNOG:KOG2091EMBL:AL161491EMBL:CP002687
EnsemblPlants:AT4G01040EnsemblPlants:AT4G01040.1entrez:827924Gene3D:3.20.20.80
GeneID:827924GO:GO:0004568GO:GO:0005783GO:GO:0005975
GO:GO:0006032GO:GO:0016021Gramene:AT4G01040.1hmmpanther:PTHR11177
HOGENOM:HOG000006155InterPro:IPR001223InterPro:IPR011583InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT4G01040KO:K17525OMA:YSINERI
Pfam:PF00704PhylomeDB:Q9M159PIR:G85013Proteomes:UP000006548
RefSeq:NP_192013.1SMART:SM00636SMR:Q9M159STRING:3702.AT4G01040.1
SUPFAM:SSF51445TAIR:AT4G01040TMHMM:TMhelixUniGene:At.43096
UniProt:Q9M159
Coordinates (TAIR10) chr4:+:453383..455407
Molecular Weight (calculated) 49145.20 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.31
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MARRRRSSAA ESLKRRNDGY ESLCQVVQQD SDRRLITIFV IFFIVIPAVS IAVYKVKFAD RVIQTESSIR QKGIVKTDIN FQEILTEHSK ASENSTRHYD
101: YPVLAYITPW NSKGYDMAKI FNSKFTHLSP VWYDLKSQGS GLVLEGRHNA DKGWIQELRS RGNALILPRV VLEAIPGEML NKKKLREKAI SLIVTECKEM
201: EYNGIVLESW SRWAAYGVLH DPDLRKMALK FVKQLGDALH STSSPRNNQQ HMQFMYVVGP PRSEKLQMYD FGPEDLQFLK DSVDGFSLMT YDFSNPQNPG
301: PNAPVKWIDL TLKLLLGSSN NIDSNIARKV LLGINFYGND FVISGDSGGG GAITGRDYLA LLQKHKPTFR WDKESGEHLF MYRDDKNIKH AVFYPTLMSI
401: LLRLENARLW GIGISIWEIG QGLDYFFDLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)