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AT5G15610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proteasome component (PCI) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT3G02200.2); Has 426 Blast hits to 426 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 114; Plants - 66; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNP7eggNOG:KOG2753EMBL:AL391143EMBL:AY099844
EMBL:BT000340EMBL:CP002688EnsemblPlants:AT5G15610EnsemblPlants:AT5G15610.1
entrez:831413ExpressionAtlas:Q9LF21GeneID:831413GO:GO:0000502
GO:GO:0001731GO:GO:0003743GO:GO:0005852GO:GO:0006446
GO:GO:0016282GO:GO:0033290Gramene:AT5G15610.1HAMAP:MF_03012
hmmpanther:PTHR15350hmmpanther:PTHR15350:SF2HOGENOM:HOG000005880InterPro:IPR000717
InterPro:IPR027528KEGG:ath:AT5G15610KO:K15030OMA:ARVFMEI
Pfam:PF01399PhylomeDB:Q9LF21PIR:T51539Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
RefSeq:NP_197065.1SMR:Q9LF21STRING:3702.AT5G15610.1TAIR:AT5G15610
UniGene:At.25003UniProt:Q9LF21
Coordinates (TAIR10) chr5:+:5079579..5081929
Molecular Weight (calculated) 49770.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.06
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTIVPTSEE DPYLAIVRFT SQLAWADAGP EVAEPEVSRL CKEAEESIIN GKWLDLATLM VTSADLVSAK ISEKDLECTY TIICNLVKNA NSPEEVLEMV
101: KAIAAKVIQQ PNDKASLRLK ILFNLYNLVD HPNARFQVYM KALELAVNGK VTEYIVPSFK KIDSFLKEWN IDIKDQRELF LAIAKVLREN KSFAKESLQF
201: VTNYLATFSN EDTQVLSEAK EEAVRAVIEF VKAPSIFQCD LLDHPAVAQL EKDPNNAPVY QLLKIFLTQR LDAYMEFQNA NSGFLQTYGL VEEDCVAKMR
301: LLSLVDLASD DSGKIPYASI KNTLQVNDEE VELWVVKAIT AKLVACKMDQ MNQVVIVRQV SNLLLFRFIC VNPKSHILVL HICSCISRCA EREFGQKQWQ
401: SLRTKLAAWR DNVRNVISTI ESNKATEEGT QTSSAAQGLT VR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)