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AT5G41940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G53570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2197EMBL:AK176436EMBL:CP002688
EnsemblPlants:AT5G41940EnsemblPlants:AT5G41940.1entrez:834199GeneID:834199
GO:GO:0016021Gramene:AT5G41940.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF293
HOGENOM:HOG000243260InterPro:IPR000195KEGG:ath:AT5G41940OMA:NSESIMQ
Pfam:PF00566Pfscan:PS50086PhylomeDB:Q67YN2PROSITE:PS50086
Proteomes:UP000006548RefSeq:NP_199009.2SMART:SM00164SMR:Q67YN2
STRING:3702.AT5G41940.1SUPFAM:SSF47923TAIR:AT5G41940TMHMM:TMhelix
UniGene:At.7784UniProt:Q67YN2
Coordinates (TAIR10) chr5:+:16782039..16785451
Molecular Weight (calculated) 62336.00 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.33
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MMFPRLRLTK VFFSPIIAGK WIVFADGSSG GGVGRNGYYG GLWSSAVIPS NVGLAVAVTV MAVAVAFTVY SRRGSIGSPW SLRRRKRVLQ PKQWNAFFTE
101: EGRLSDGGVK FLKKVRSGGV HPSIRPEVWP FLLGVYDLKS NKEERDSIRQ LKLTEYENLR RQCREIHERY ENVCDSKETA QSSNTEDSQV LESHDIEEVE
201: SSTRTITVDE SEKLNSESIM QDENCEKSDV TTEDAAGNDS DSTNPEETET SPFLANEEVE SHNTVNQEKE ISSPSSKPKS QAADEDFMST WQRIIRLDAV
301: RANDEWVPYS PTQAAVSETK ARGIAIQVGL NDYDHLEPCR IFHAARLVGI LEAYAVYDPE IGYCQGMSDL LSPLIAVMED DVLAFWCFVG FMSKARHNFR
401: LDEVGIRRQL SMVSKIIKFK DIHLYRHLEN LEAEDCFFVY RMVVVLFRRE LTFEQTLCLW EVMWADQAAI RTGIAKATWG RIRLRAPPTE DLLLYAIAAS
501: VLQRRKTIIE KYSGMDEIMK ECNSMAGHLD VWKLLDDAHD LVVNLHDKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)