AT4G31080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF2296) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF2296); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2296 (InterPro:IPR019273); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2296) (TAIR:AT2G24330.1); Has 339 Blast hits to 333 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 115; Plants - 80; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15121186..15123072 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45345.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQEQEGAVV EKGEPNDSSA AAVAATATAT ADSVKKKQNG FFSRLWNGIF RVRGDDFEKR LQYISREEAT VLSRMKRRSI SWRKLTRNLI VSSVLFEIIA 101: VGYAILTTRT EDLDWRMRSF RILPMFILPA VSALAYSSIV SFSKMFDRRD QKTLEKLRAE RLAKINELKE RTNYYTTQQL IQRYDPDPAA KAAAATVLAS 201: KLGADSGLKV YLGDESQLDP SSGKSNDMEV NQSRGLRNRR QPNTRPHGSG STSTHHSDDE SHHSGTSERF PGTTEQNQQM LVEHYSPQGY AAHDGSWISR 301: IAALLVGEDP TQSYALICGN CRMHNGLARK EDFAYITYYC PHCNALNKPK HSEENVLLPA ISASPITDSL PLIETSEVVN SSSSSSERGS SPTPEIKEEA 401: AITETGTPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)