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AT5G03540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : exocyst subunit exo70 family protein A1
Curator
Summary (TAIR10)
AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree
Computational
Description (TAIR10)
exocyst subunit exo70 family protein A1 (EXO70A1); INVOLVED IN: lateral root morphogenesis, mucilage biosynthetic process involved in seed coat development, root development, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, plasma membrane, membrane, exocyst; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17085eggNOG:ENOG410YIGIeggNOG:KOG2344EMBL:AL162751
EMBL:AY072155EMBL:AY133751EMBL:CP002688EnsemblPlants:AT5G03540
EnsemblPlants:AT5G03540.1entrez:831809ExpressionAtlas:Q9LZD3GeneID:831809
GO:GO:0000145GO:GO:0005576GO:GO:0005618GO:GO:0005829
GO:GO:0005856GO:GO:0005886GO:GO:0006887GO:GO:0009524
hmmpanther:PTHR12542hmmpanther:PTHR12542:SF41HOGENOM:HOG000238421IntAct:Q9LZD3
InterPro:IPR004140InterPro:IPR016159ncoils:CoilPANTHER:PTHR12542
PaxDb:Q9LZD3PDB:4RL5PDBsum:4RL5Pfam:PF03081
Pfam:Q9LZD3PhylomeDB:Q9LZD3PIR:T48380PRIDE:Q9LZD3
PRO:PR:Q9LZD3ProteinModelPortal:Q9LZD3Proteomes:UP000006548Reactome:R-ATH-5620916
RefSeq:NP_195974.2SMR:Q9LZD3STRING:3702.AT5G03540.3SUPFAM:SSF74788
TAIR:AT5G03540tair10-symbols:ATEXO70A1tair10-symbols:EXO70A1UniGene:At.4876
UniProt:Q9LZD3
Coordinates (TAIR10) chr5:+:889606..893916
Molecular Weight (calculated) 72302.70 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.40
Length 638 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVDSRMDLL SERAVLMRAS LQKSQTITDN VVSILGSFDS RLSALETAMR PTQIRTHAIR KAHENIDRTL KAAEVILSQF DLLRQAETKV LKGPHEDLES
101: YLDAIAQLRK IIRYFMSNKS FKSSDGVLNH ANSLLAKAQS KLEEEFKQLL ASYSKAVEPD RLFDGLPNSL RPSSDGDGGG KPHGGHHNDD AETAAYTLPI
201: LIPSRVLPLL HDLAQQMVQA GHQQQLLQIY RDTRSFVLEE SLKKLGVEKL SKEDVQRMQW EVLEAKIGNW IHFMRIAVKL LFAGERQVCD QIFRGFDSLS
301: DQCFAEVTVS SVSMLLSFGD AIARSKRSPE KLFVLLDMYE IMRELHTEIE TIFKGKACLE IRDSATGLTK RLAQTAQETF GDFEEAVEKD ATKTAVLDGT
401: VHPLTSYVIN YVKFLFDYQT TLKQLFLEFG NGDDSNSQLA SVTMRIMQAL QNNLDGKSKQ YKDPALTHLF LMNNIHYMVR SVRRSEAKDL LGDDWVQRHR
501: RIVQQHANQY KRVAWTKILQ SSSAQGLTSS GGGSLEGGNS SGVSRGLLKE RFKMFNMQFD ELHQRQSQWT VPDTELRESL RLAVAEVLLP AYRSFLKRFG
601: PLVESGKNPQ KYIKYTAEDL ERLLGELFEG KSMNEPRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)