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AT1G47550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : exocyst complex component sec3A
Curator
Summary (TAIR10)
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Computational
Description (TAIR10)
exocyst complex component sec3A (SEC3A); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3B (TAIR:AT1G47560.1); Has 427 Blast hits to 415 proteins in 159 species: Archae - 5; Bacteria - 8; Metazoa - 155; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
BioGrid:26389eggNOG:ENOG410XQEEeggNOG:KOG2148EMBL:AC007519
EMBL:CP002684EnsemblPlants:AT1G47550EnsemblPlants:AT1G47550.1entrez:841164
ExpressionAtlas:Q9SX85GeneID:841164Genevisible:Q9SX85GO:GO:0005829
GO:GO:0005856GO:GO:0005886GO:GO:0006887GO:GO:0009524
hmmpanther:PTHR16092hmmpanther:PTHR16092:SF21HOGENOM:HOG000005665InParanoid:Q9SX85
IntAct:Q9SX85InterPro:IPR019160InterPro:IPR028258iPTMnet:Q9SX85
ncoils:CoilPaxDb:Q9SX85Pfam:PF09763Pfam:PF15277
Pfam:Q9SX85PhylomeDB:Q9SX85PIR:H96515PRIDE:Q9SX85
PRO:PR:Q9SX85ProteinModelPortal:Q9SX85Proteomes:UP000006548Reactome:R-ATH-5620916
RefSeq:NP_175186.2SMART:SM01313STRING:3702.AT1G47550.2TAIR:AT1G47550
tair10-symbols:SEC3AUniGene:At.38602UniProt:Q9SX85
Coordinates (TAIR10) chr1:+:17457171..17463896
Molecular Weight (calculated) 100070.00 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.33
Length 887 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSSADDEE LRRACEAAIE GTKQSIVMSI RVAKSRGVWG KSGKLGRQMA KPRVLALSVK SKGPRKKAFL RVMKYSSGGV LEPAKMYKLK HLSKVEVITN
101: DPSGCTFTLG FDNLRSQSVA PPQWTMRNTD DRNRLLVCIL NICKDVLGRL PKVVGIDIVE MALWAKDNTP VVTTQRSTED GEPVAESVTE SDLKVTVEKE
201: LVSQAEEEDM EALLGTYVMG IGEAEAFSER LKRELQALEA ANVHAILESE PLVDEVLNGL EAATNIVDDM DEWLGIFNIK LRHMREDIES IETRNNKLEM
301: QSVNNKALIE ELDKVIERLR VPSEYAASLT GGSFDEADML QNIEACEWLA KALRGLEVPN LDPIYANMRA VKEKRAELEK LKATFVRRAS EFLRNYFASL
401: VDFMVSDKSY FSQRGQLKRP DHADLRYKCR TYARLLQHLK GLDKNCLGPL RKAYCSSLNL LLRREAREFA NELRASTKVS RNPTVWLEGS TGSSQNANTD
501: TSAVSDAYAK MLTIFIPLLV DESSFFAHFM CFEVPALAPP GGAGNDKKSQ SNNDDGNDDD DLGIMDIDET DKKPGKNSPD LTALNESLQD LLDGIQEDFY
601: AVVDWAYKID PLRCISMHGI TERYLSGQKA DAAGFVRLLL GDLESRVSMQ FSRFVDEACH QIERNERNVR QMGVLPYIPR FAALATRMEQ YIQGQSRDLV
701: DQAYTKFVSI MFVTLEKIAQ QDPKYADILL LENYAAFQNS LYDLANVVPT LAKFYHQASE AYEQACTRHI SMIIYYQFER LFQFAKKIED FMYTITPEEI
801: PFQLGLSKVE LRKMLKSSLS GVDKSIAAMY KKLQKNLASE ELLPSLWDKC KKEFLDKYES FVQLVAKVYP SENVPGVTEM RGLLASM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)