AT3G18480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCAAT-displacement protein alternatively spliced product | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565–689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CCAAT-displacement protein alternatively spliced product (CASP); INVOLVED IN: intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASP, C-terminal (InterPro:IPR012955); Has 108439 Blast hits to 62245 proteins in 2877 species: Archae - 1242; Bacteria - 16953; Metazoa - 49041; Fungi - 8922; Plants - 5181; Viruses - 394; Other Eukaryotes - 26706 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6336924..6341596 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79688.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 689 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVSQDGSER DKTPPPSSSS SSSSPIPVVT NFWKEFDLEK EKSLLDEQGL RIAENQENSQ KNRRKLAEST RDFKKASPEN KLSMFNSLLK GYQEEVDNIT 101: KRAKFGENAF LNIYQKLYEA PDPFPALASI AEQDRKLSEV ESENRKMKVE LEEFRTEATH LKNQQATIRR LEERNRQLEQ QMEEKIKEVV EIKQRNLAEE 201: NQKTMELLKD REQALQDQLR QAKDSVSTMQ KLHELAQNQL FELRAQSDEE TAGKQSEVSL LMDEVERAQT RLLTLEREKG HLRSQLQTAN EDTDNKKSDN 301: IDSNSMLENS LTAKEKIISE LNMEIHNVET ALANERESHV AEIKKLNSLL NKKDTIIEEM KKELQERPSA KLVDDLRKKV KILQAVGYNS IEAEDWDAAT 401: TGEEMSKMES LLLDKNRKME HEVTQLKVQL SEKASLLEKA EAKGEELTAK VNEQQRLIQK LEDDILKGYG SKERKGALFD EWEFSEAGVA EQSEPMDQKH 501: VPSEQDQSSM LKVICSQRDR FRARLRETEE EIRRLKEKIG FLTDELEKTK ADNVKLYGKI RYVQDYNHDK VVSRGSKKYV EDLESGFSSD VESKYKKIYE 601: DDINPFAAFS KKEREQRIKD LGIRDRITLS SGRFLLGNKY ARTFAFFYTI GLHVLVFTCL YRMSAYSYLS HGAEETLMTE ATTNLPHGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)