AT2G19950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : golgin candidate 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
golgin candidate 1 (GC1); CONTAINS InterPro DOMAIN/s: Golgin subfamily A member 5 (InterPro:IPR019177); BEST Arabidopsis thaliana protein match is: golgin candidate 2 (TAIR:AT1G18190.1); Has 72479 Blast hits to 43598 proteins in 2837 species: Archae - 714; Bacteria - 12764; Metazoa - 33819; Fungi - 6786; Plants - 4969; Viruses - 184; Other Eukaryotes - 13243 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8616341..8621219 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79184.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.87 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||
| Length | 707 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASWLKAAED LFEVVDRRAK SVVEDLSEEQ NDLQLPASGR KGSQGKRTSS KKKKLVKEES SNKRDSSGDQ SGPGVSQSEV PPSKSSVSTD ETSSSGPVLL 101: TREIHPTDAD VQSVLSLPLS VADTKSDDAA VVAQESIVDG DRSESKHADG DIPNDSLVQP SPSLPDKEIE VVVSENLMDA PKNGTQRELD DSSKRDVENL 201: DSVVHAPSVN EGNVAQSTGD EVKVGTSINL EKEQEPKVPV TSTNLKREQD RRADTTSMKI QDQLEEAQGL LKATVSTGQS KEARLARVCA GLSSRLQEIK 301: AENAQLEELL TAEQELTKSY EASIRHLQKD LSAAKSEVTK VESSMVEALA AKNSEIETLV SAMDALKNQA ALNEGKLSSL QGDMESIMRN RELAETRMMQ 401: ALREELATTE RRAEEERSAH NATKMAAMER ERELEHRAVD ASTALVRIQR IADERTAKVA DFEQKVALLE AECTSLNQEL QDMEVRARRG QKKAPDEANQ 501: VIQIQAWQDE VDRARQGQRD AEEKLSLMEA EMQKLRVEMA AMKRDAEHYS RQEHTELEKR YRELTDLLYY KQTQLETMAS EKAAAEFQLE KEVKRLHEAQ 601: VEVEKSRVSR RASATWEEDS EIKTLEPLPL YHRHMATAST QLQNAVKLLD SGAVRATRFL WRYPIARMFL LFYLVFVHLF LMYLIHRLQE QAEAQEVAAM 701: TNNVFRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)