AT4G02030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vps51/Vps67 family (components of vesicular transport) protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vps51/Vps67 family (components of vesicular transport) protein; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 511 Blast hits to 475 proteins in 172 species: Archae - 2; Bacteria - 9; Metazoa - 205; Fungi - 94; Plants - 90; Viruses - 4; Other Eukaryotes - 107 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:892262..897175 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 88521.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||
| Length | 780 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATEAAPMDE KAKRMRDLLS SFYAPDPSIS TSGSSINASF DNINSTSFDA DQYMDLMIKK SNLEVLLQRH VQMAAEIKNL DTDLQMLVYE NYNKFISATD 101: TIKRMKSNIF GMEGNMDQLL QKIMSVQSKS DGVNTSLFEK REHIEKLHRT RNLLRKVQFI YDLPARLQKC IKSEAYGDAV RFYTGAMPIL KVYGDTSFQD 201: CRRASEEAIE IIIKNLQTKL FSDSESIQAR AEAAVLLKQL DVPVDSLKAK LLEKLEQSLD GLQIKPEEAS TLVEDDDSSN DTESNDQHPA KIHEDAVRGF 301: SEAIRAYREI FPDSEERLFK LARALTAMHF EYMELYIKKR VSAADFLGIF RIVWEDVVLM DEVLPEAALS DLSAEAAQVT LKQFVARMFS HLQQDISDTL 401: LKFDINQKEA VEGELLKVVL EASQKAVLQG TTNIFQDFRQ LLDEKTGIFI KMKDLISGWI QKGSQDFFRS LEAQFLVLSG KTSSSNDIEG KSSDKIHAGL 501: ILVLAQLSVF IEQKVIPRVT EEIAASFSGG NSQAFENGPA FIPGELCRVF HAASEKLLQH YIDTRTQKVS VLLRKRFKTP NWVKHKEPRE VHMYVDMFLH 601: ELEEVGKEVK QVLPQGTFRK HKRTDSNGSN TTTSSRSNTL HNDKMARSNS QRARSQLFET HLAKLFKQKV EIFTKVEFTQ ESVVTTTVKL CLKSLQEYVR 701: LQTFNRSGFQ QIQLDIQFLK APLKEAVEDE AAIDFLLDEV IVAASERCLD VIPLEPPILD KLIQAKLAKS KEHNNNTVSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)