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AT1G71270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vps52 / Sac2 family
Curator
Summary (TAIR10)
Encodes a homolog of the yeast Vps52p/SAC2. Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network.
Computational
Description (TAIR10)
POKY POLLEN TUBE (POK); CONTAINS InterPro DOMAIN/s: Vps52/Sac2 (InterPro:IPR007258); BEST Arabidopsis thaliana protein match is: Vps52 / Sac2 family (TAIR:AT1G71300.1); Has 820 Blast hits to 773 proteins in 240 species: Archae - 10; Bacteria - 70; Metazoa - 261; Fungi - 156; Plants - 82; Viruses - 2; Other Eukaryotes - 239 (source: NCBI BLink).
Protein Annotations
BioGrid:28688eggNOG:ENOG410XNZ1eggNOG:KOG1961EMBL:AC016162
EMBL:AF367286EMBL:AK221995EMBL:BK000522EMBL:BT004525
EMBL:CP002684EnsemblPlants:AT1G71270EnsemblPlants:AT1G71270.1entrez:843468
GeneID:843468Genevisible:Q94KD3GO:GO:0000139GO:GO:0000938
GO:GO:0005794GO:GO:0009860GO:GO:0010008GO:GO:0012505
GO:GO:0015031GO:GO:0019953Gramene:AT1G71270.1hmmpanther:PTHR14190
hmmpanther:PTHR14190:SF7HOGENOM:HOG000020960InParanoid:Q94KD3InterPro:IPR007258
iPTMnet:Q94KD3KEGG:ath:AT1G71270ncoils:CoilOMA:ALVDNAC
PANTHER:PTHR14190PaxDb:Q94KD3Pfam:PF04129Pfam:Q94KD3
PhylomeDB:Q94KD3PIR:D96737PRIDE:Q94KD3PRO:PR:Q94KD3
ProteinModelPortal:Q94KD3Proteomes:UP000006548RefSeq:NP_565015.1STRING:3702.AT1G71270.1
TAIR:AT1G71270tair10-symbols:ATVPS52tair10-symbols:POKtair10-symbols:TTD8
UniGene:At.23282UniProt:Q94KD3
Coordinates (TAIR10) chr1:+:26863736..26869817
Molecular Weight (calculated) 80943.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.13
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDISIDALG QTMGDFSNHE KLGFDLGAFV GDLAFEEDSG SEDISLEGLQ QELEECESDE VVANILSSGD KLREYAKGVE NNLRKVELDS IEDYIKESDN
101: LVSLHDQIRD CDSILSQMET LLSGFQEEIG SISSDIKILQ EKSMDMGLRL KNRRVAESKL AKFVEDIIVP PKMIDVIVDG EVNEEYMKTL EILSKKLKFV
201: EADQAVKSSK ALKDVEPELE KLRQKAISKV YDFIVQKLIA LRKPKTNIQI LQQSVLLKYK YIISFLKEHG KEVFMDVRAA YIDTMNKVLS AHFRAYIQAL
301: EKLQLDIATA YDLIGVETRT TGLFSRAREP LKNRSAVFAL GDRIKIIKDI DQPALIPHIA EASSLKYPYE VLFRSLHKLL MDTATSEYMF CDDFFGEESI
401: FYEIFAGPFS VIDEHFNPVL SNCFDAIGLM LMIRIIHHHQ LIMSRRRIPC LDSYLDKVNI SLWPRFKMVF DSHLSSLRDA NIKTLWEDDV HPHYVMRRYA
501: EFTASFIHLN VEYGDGQLDI NLERLRMAVD GLILKLAKLF PRPKQQIVFL INNYDMTIAV LKEAGPEGGK IQMHFEEMLK SNTSLFVEEL LVEHFSDLIK
601: FVKNRASEDS SLNPERSITI AEVEPLVKDF GSRWKTAIEL MDKDIITSFS NFLCGMDILR AALTQLLLYY TRLTDCIKKI DGGSALNRDL VSIQSIMYEI
701: RKYSKTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)