AT3G62360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding-like fold | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784); Has 321 Blast hits to 256 proteins in 98 species: Archae - 6; Bacteria - 117; Metazoa - 138; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23073020..23080455 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132951.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||
| Length | 1227 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASRKICHS LIVFLIAIST VYGVSADSIK GCGGFVEASS SLVRSRKGSD GKLDFSHITV ELQTVDGLVK DSTQCAPNGY YFIPVYDKGS FILKINGPDG 0101: WSWNPDKVTV VVDDSSCNNN DDINFHFTGF TLSGKVLGAV GGESCLIKNG GPADVNVELL SSDGSEDPVA SVLTSSDGSY LFKNIIPGTY NIRASHPELQ 0201: VEVRGSTEVE LGFANGMVDD IFFVLGYDLK GSVVAQGNPI LGVHIYLHSD DVSMVDCPQG SGDAAGERKS LCHAVSDAEG IFSFKSIPCG KYELVPHYKG 0301: ENTVFDVSPP VMPVSVEHQH VTVPQKFQVT GFSIGGRVVD GNSVGVEGVK ILVDGSLRSV TDKEGYYKLD QPAKLVVTQP LLVNFLRLLE SRVKNMARFL 0401: KVTSNQYTID AVKEHYKFDK LKKFMVLPNM ASLPDINAVS YDICGVVRMF GSRHKAKVAL THGPTNVKPQ MKLTDETGAF CFEVPPGEYR LSALAATPKG 0501: ASELLFLPAY VDVAVKSPLL NIEFSQARVN VHGSVTCKEK CGPSVSVVLV GAAGDRDKKT VVLTDESSQF LFSDILPGKY RVEVKSISPE AASDEDSWCW 0601: DRSSIDVNVG TEDIKGIEFV QKGYWINIIS THEVDARIAH PDGSPTSLKI KKGSQKICIE SPGGHELQLS DSCMSFGSNS IKIDVSNPQP IHLKAEKYLL 0701: KGLINVESSS TIESELQENF IVDIQDKKGN VINTIAAKLA SDGSGVYEYY TWASLGEKIS FVPQDSRGNV EKKMLFYPKE IHAVVSKDGC QASVSPFTGR 0801: LGLYIQGSVS PPLPGVNIKI FAAKDSLISS LKKGEIAIET STLSAGSFVA GPLYDDIPYA TEASKPGYHI KRLGPYSFSC QKLGQISVRV NSKDNAETSI 0901: PPLLLSLSGD HGYRNNSISG AGGLFVFDSL FPGNFYLRPL LKEYSFKPST LAIELNSGES SEAVFEATRV AYSAMGRVAL LSGQPQEGVA IEARSDSKGY 1001: YEETTSDING NYRLRGLHPD TAYVIKVSKK IGSANNQIER ASPESVSLQI GYEDINGLDF LVFEQPETTI LTCHVEGKQN EDLNSNLLVE IKSAIDKSKI 1101: ENVFPLPLSN FFQVKGLPKG KHLVQLKSSR PLISHKVESE IIEVDFETNA QIHIGPLRYS IVADHQSQEV TPAAILPLVI GVSAIALFLS IPRLKDIYQA 1201: TVGISSPGFT TSAKREPRKA VARKKTF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)