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AT5G11560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17151019
AmiGO : plasma membrane 17644812
AmiGO : vacuole 15539469
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : catalytics
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
catalytics; FUNCTIONS IN: catalytic activity; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1620 (InterPro:IPR011678), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); Has 475 Blast hits to 428 proteins in 206 species: Archae - 4; Bacteria - 52; Metazoa - 151; Fungi - 150; Plants - 40; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPCReggNOG:KOG2103EMBL:CP002688EnsemblPlants:AT5G11560
EnsemblPlants:AT5G11560.1entrez:831028Gene3D:2.140.10.10GeneID:831028
GO:GO:0005773GO:GO:0005774GO:GO:0005783GO:GO:0005794
GO:GO:0005886GO:GO:0072546Gramene:AT5G11560.1hmmpanther:PTHR21573
hmmpanther:PTHR21573:SF0InParanoid:F4JXW9InterPro:IPR002372InterPro:IPR011047
InterPro:IPR011678InterPro:IPR026895InterPro:IPR027295iPTMnet:F4JXW9
KEGG:ath:AT5G11560OMA:INIDQHRPANTHER:PTHR21573:SF0PaxDb:F4JXW9
Pfam:PF07774Pfam:PF13360PRIDE:F4JXW9ProteinModelPortal:F4JXW9
Proteomes:UP000006548RefSeq:NP_196717.3STRING:3702.AT5G11560.1SUPFAM:SSF50998
SwissPalm:F4JXW9TAIR:AT5G11560TMHMM:TMhelixUniGene:At.5135
UniProt:F4JXW9
Coordinates (TAIR10) chr5:-:3709734..3713994
Molecular Weight (calculated) 108874.00 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.05
Length 982 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRVFLTLL LFLSSAILSF SLYEDQAGLT DWHQRYIGKV KHAVFHTQKT GRKRVIVSTE ENVVASLDLR HGEIFWRHVL GTKDAIDGVG IALGKYVITL
101: SSEGSTLRAW NLPDGQMVWE TSLHTAQHSK SLLSVPINLK VDKDYPITVF GGGYLHAVSA IDGEVLWKKD FTAEGFEVQR VLQAPGSSII YVLGFLHSSE
201: AVVYQIDSKS GEVVAQKSTV FPGGFSGEIS SVSSDKVVVL DSTRSILVTI GFIDGDISFQ KTPISDLVED SGTAEILSPL LSNMLAVKVN KRTIFVNVGD
301: KGKLEVVDSL SDETAMSDSL PVADDQEAFA SVHHEGSRIH LMVKLVNDLN NVLLRETIQM DQNRGRVHKV FMNNYIRTDR SNGFRALIVM EDHSLLLLQQ
401: GAIVWSREEG LASVTDVTTA ELPLEKDGVS VAKVEHTLFE WLKGHVLKLK GSLLLASPED VVAIQDLRVK SSGKNKLTRD HNGFRKLILA LTRAGKLFAL
501: HTGDGRIVWS MLLNSPSQSQ SCERPNGVSL YQWQVPHHHA MDENPSVLVV GKCGSDSSAP GVLSFVDVYT GKEISSSDIG HSVVQVMPLP ITDSKEQRLH
601: LIADTVGHVH LYPKTSEALS IFQREFQNVY WYTVEADDGI IRGHVMKGSC SGETADEYCF TTRELWTVVF PSESEKIIST LTRKPNEVVH TQAKVNTDQD
701: LLYKYVSRNL LFVATVSPKG AGEIGSVTPE ESSLVVYLID TITGRILHRL SHQGCQGPVH AVFSENWVVY HYFNLRAHKY EVTVVEIYDQ SRAENKNVWK
801: LILGKHNLTA PITSYSRPEV FTKSQSYFFA QSVKTIAVTS TAKGITSKQL LIGTIGDQIL ALDKRFVDPR RTLNPSQAEK EEGIIPLTDT LPIIPQAYVT
901: HSHKVEGLRG IVTAPSKLES TTHVFAYGVD LFYTRLAPSK TYDSLTDDFS YALLLITIVA LVAAIYITWV LSEKKELSEK WR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)