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AT5G63840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:in house (None): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15028209 (2004): plastid
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g63840-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (endoplasmic reticulum marker)

At5g63840-GFP
(full-length)
endoplasmic reticulum marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g63840-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolases family 31 protein
Curator
Summary (TAIR10)
radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.
Computational
Description (TAIR10)
RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63840-MONOMERBioGrid:21746BRENDA:3.2.1.84CAZy:GH31
EC:3.2.1.84eggNOG:COG1501eggNOG:KOG1066EMBL:AB007646
EMBL:AK226927EMBL:CP002688EnsemblPlants:AT5G63840EnsemblPlants:AT5G63840.1
entrez:836504GeneID:836504Genevisible:Q9FN05GO:GO:0005783
GO:GO:0009507GO:GO:0009826GO:GO:0015926GO:GO:0030244
GO:GO:0030246GO:GO:0033919GO:GO:0042742GO:GO:0046686
Gramene:AT5G63840.1hmmpanther:PTHR22762hmmpanther:PTHR22762:SF54HOGENOM:HOG000115864
InParanoid:Q9FN05InterPro:IPR000322InterPro:IPR011013InterPro:IPR017853
InterPro:IPR025887iPTMnet:Q9FN05KEGG:ath:AT5G63840KO:K05546
OMA:FDEEREWPaxDb:Q9FN05Pfam:PF01055Pfam:PF13802
Pfam:Q9FN05PhylomeDB:Q9FN05PRIDE:Q9FN05PRO:PR:Q9FN05
ProteinModelPortal:Q9FN05Proteomes:UP000006548RefSeq:NP_201189.1SMR:Q9FN05
STRING:3702.AT5G63840.1SUPFAM:SSF51011SUPFAM:SSF51445SUPFAM:SSF74650
TAIR:AT5G63840tair10-symbols:PSL5tair10-symbols:RSW3UniGene:At.27632
UniPathway:UPA00957UniProt:Q9FN05
Coordinates (TAIR10) chr5:+:25545056..25548922
Molecular Weight (calculated) 104280.00 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.43
Length 921 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLLFVLSL ICFCSQTALS WKKEEFRSCD QTPFCKRARS RTPGACSLIV GDVSITDGDL VAKLLPKAPN QGDGDQIKPL ILSLSVYKDG IVRLKIDEDH
101: SLNPPKKRFQ VPDVVVSEFE EKKIWLQKVA TETISGDTSP SSVVYVSDGY EAVVRHDPFE VYVREKSGDR RRVVSLNSHG LFDFEQLGRK TEGDNWEEKF
201: RTHTDSRPSG PQSISFDVSF YDSSFVYGIP EHATSFALKP TKGPGVEESE PYRLFNLDVF EYDHESPFGL YGSIPFMVSH GKSGKTSGFF WLNAAEMQID
301: VLANGWDAES GISLPSSHSR IDTFWMSEAG IVDTFFFVGP EPKDVVKQYA SVTGTSAMPQ LFATGYHQCR WNYKDEEDVA QVDSKFDEHD IPYDVLWLDI
401: EHTDGKRYFT WDSVLFPHPE EMQKKLAAKG RKMVTIVDPH IKRDDSYFLH KEATQMGYYV KDSSGKDFDG WCWPGSSSYI DMLSPEIRKW WGGRFSYKNY
501: VGSTPSLYTW NDMNEPSVFN GPEVTMPRDA LHVGGVEHRE VHNAYGYYFH MATSDGLVMR EEGKDRPFVL SRAIFPGTQR YGAIWTGDNT AEWEHLRVSI
601: PMILTLGLTG ITFSGADIGG FFGNPEPELL VRWYQVGAYY PFFRGHAHHD TKRREPWLFG ERNTELMRDA IHTRYTLLPY FYTLFREANV TGVPVVRPLW
701: MEFPQDEATF SNDEAFMVGS GLLVQGVYTK GTTQASVYLP GKESWYDLRN GKTYVGGKTH KMDAPEESIP AFQKAGTIIP RKDRFRRSSS QMDNDPYTLV
801: VALNSSQEAE GELYIDDGKS FEFRRGSYIH RRFVFSKGVL TSTNLAPPEA RLSSQCLIDR IILLGHSSGP KSALVEPLNQ KAEIEMGPLR MGGLVASSGT
901: KVLTIRKPGV RVDQDWTVKI L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)