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AT3G46220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XSRXeggNOG:KOG2235EMBL:AL355775
EMBL:CP002686EnsemblPlants:AT3G46220EnsemblPlants:AT3G46220.1entrez:823767
ExpressionAtlas:Q9LX73GeneID:823767Genevisible:Q9LX73GO:GO:0016874
hmmpanther:PTHR31057hmmpanther:PTHR31057:SF0HOGENOM:HOG000005738InParanoid:Q9LX73
InterPro:IPR018611KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
ncoils:CoilPaxDb:Q9LX73Pfam:PF09743Pfam:Q9LX73
PhylomeDB:Q9LX73PIR:T49263PRIDE:Q9LX73PRO:PR:Q9LX73
ProteinModelPortal:Q9LX73Proteomes:UP000006548RefSeq:NP_566883.4STRING:3702.AT3G46220.2
TAIR:AT3G46220UniGene:At.1484UniGene:At.70182UniProt:Q9LX73
Coordinates (TAIR10) chr3:+:16979174..16983970
Molecular Weight (calculated) 89078.10 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.33
Length 804 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDELLELQR QFEFAQQVKS SVRLSDRNVV ELVQKLQELG VIDFDLLHTV TGKEYITQEQ LRNEITREIS KLGRVSVIDL ADTIGVDLYH VEKQAQDVVL
101: NDPGLMLVQG EIISQSYWDS IAEEINERLQ ECSQIAVAEL AGQLQVGSEL VQSVLEPRLG TLVKARLEGG QLYTPAYVER VTAMVRGASR GIFVPSNLSA
201: LWAPLQQLVQ ETNGASGVAV ENSFFQSIFN RLLKEEEMLG SLRAGTHWTP SAFATAQKEC VDSSFSQNSY ISYESMQKLG ISQAVQFLQS RYPDGTPLAA
301: VFIHSSMIEM LDSATEDAIE QNSWIDSLSV LPSSFTSQDA NKMLLLCPSV QSALKAEKAL ILGESYVLSS GFIKGIYDQI EKEADAFSIQ ASTATLIHPS
401: SKSSESTESI PANTDKGSKK KKGKSASTKA ATVETVPDDE EDARPKSKRN QKKGRDSSSS QKLDSKAGGK KESVKAQESN NIIPPDEWVM KKIVDSVPEF
501: EDDGTENPDS ILKHLADHMK PMLINSLKER RKKIFTENAD RMRRLIDDLQ KKLDESFLNM QLYEKALDLF EDDQSTAVVL HRHLLRTTAA TIADTLLHGL
601: DIHNKMKNGT EVEESKTQDL VLLDSSERTA LAKNLNGSLS KKALALVEAL EGKRVDTFMV TFRDLAEESG LVLKKLDKKL ERTLLHSYRK DLISQVSTES
701: DPIALLAKVV SLLFIKIHNK ALQAPGRAIA AAISHLKEKL DESAYKTLTD YQTATVTLLA LMSASSGEEH DCSADRILTK RELLESQMPL LRTLVLGDSQ
801: PQQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)