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AT5G06830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.909
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSWBeggNOG:KOG2607EMBL:AP002032EMBL:BT025331
EMBL:CP002688EnsemblPlants:AT5G06830EnsemblPlants:AT5G06830.1entrez:830574
GeneID:830574Genevisible:Q9FG23GO:GO:0000079Gramene:AT5G06830.1
hmmpanther:PTHR14894HOGENOM:HOG000241812InParanoid:Q9FG23InterPro:IPR008491
KEGG:ath:AT5G06830ncoils:CoilOMA:EIPIDIHPANTHER:PTHR14894
PaxDb:Q9FG23Pfam:PF05600Pfam:Q9FG23PhylomeDB:Q9FG23
PRIDE:Q9FG23PRO:PR:Q9FG23ProteinModelPortal:Q9FG23Proteomes:UP000006548
RefSeq:NP_196301.2STRING:3702.AT5G06830.1TAIR:AT5G06830UniGene:At.32806
UniProt:Q9FG23
Coordinates (TAIR10) chr5:-:2116882..2119559
Molecular Weight (calculated) 62132.50 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.42
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSQDDVQNL PIDITFSRLG EWLVDRKRIP ADWRKRVAVI RVKILKEFSS LPKEIDPFFQ TLDPEVIGYL EVKKVYEILL KTTPESRNIF GRLSGASGVW
101: EAIVRAFEKD HIYLGEAAQI IIQNVNYEIP YLKKQVQKVQ QQMTELDRKE ADIKRSVALS ATKYEDACRE LGLQGNNVRR ELLETASSLP STFSKILEVI
201: NSDSVTGAME YYSAYVQDVH TEKDKPLRIV LQNLKYIREN PPSLSVFGDS EGLDADNIQS SENANGTDAA ADSIDWDITV ETPEIDWDVS MVEEVDSGND
301: LGSYEIVNAS DIPENSPFKV EESQGLEVDV SEISWDVSVE TPQVEEIGDS ALLESNQTQL TDSTTQVLGS GGERSQLLET EYRNKILDDL YEVKAFLNQR
401: LIELRNEDTL SLQHHVQAVS PMVLQQYSPE TIEPMVVDIS MAISLLTNKK SRDLIMILNS KRFLDRLVSE LEEKKHREVK LRESLKDVGR RRMELQNSLS
501: AIWPKQEAAL SKTRELKELC ETSLSSMFDG RPVNIRGEIN TLLNAGVSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)