AT5G06830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.909 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2116882..2119559 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62132.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 549 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSQDDVQNL PIDITFSRLG EWLVDRKRIP ADWRKRVAVI RVKILKEFSS LPKEIDPFFQ TLDPEVIGYL EVKKVYEILL KTTPESRNIF GRLSGASGVW 101: EAIVRAFEKD HIYLGEAAQI IIQNVNYEIP YLKKQVQKVQ QQMTELDRKE ADIKRSVALS ATKYEDACRE LGLQGNNVRR ELLETASSLP STFSKILEVI 201: NSDSVTGAME YYSAYVQDVH TEKDKPLRIV LQNLKYIREN PPSLSVFGDS EGLDADNIQS SENANGTDAA ADSIDWDITV ETPEIDWDVS MVEEVDSGND 301: LGSYEIVNAS DIPENSPFKV EESQGLEVDV SEISWDVSVE TPQVEEIGDS ALLESNQTQL TDSTTQVLGS GGERSQLLET EYRNKILDDL YEVKAFLNQR 401: LIELRNEDTL SLQHHVQAVS PMVLQQYSPE TIEPMVVDIS MAISLLTNKK SRDLIMILNS KRFLDRLVSE LEEKKHREVK LRESLKDVGR RRMELQNSLS 501: AIWPKQEAAL SKTRELKELC ETSLSSMFDG RPVNIRGEIN TLLNAGVSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)