AT5G15400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.859 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : U-box domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin-ubiquitin ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin conjugation factor E4, core (InterPro:IPR019474), U box domain (InterPro:IPR003613); Has 1036 Blast hits to 1011 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 218; Plants - 177; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4997764..5002907 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117535.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1038 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MATSKPQRSP AEIEDIILRK IFYVTLTEST DSDPRIVYLE MTAAEILSEG KELLLSRDLM ERVLIDRLSG DFSDAEPPFP YLIGCHRRAY DESKKIQSMK 0101: DKNLRSEMEI VTKQAKKLAV SYCRIHLGNP DMFGNSDKPS GGLDNRLKKR NVSPVLPLIF AEVGSGSLDM FGASSSGVQA PPGFLDEFFK DSDFDSLDSI 0201: LKELYEDLRS TVINVSVLGD FQPPLRALKY LVSLPVGAKS LVSHEWWVPR GAYMNGRAME LTSILGPFFH ISALPDNTLF KSQPDVGQQC FSEASERRPA 0301: DLLSSFSTIK NFMNILYSGL HDVLMILLKS TDTRERVLQF LAEVINANAS RAHIQVDPVS CASSGMFVNL SAVMLRLCEP FLDPHLTKRD KIDPKYAFCG 0401: HRLKLSDLTA LHASSEEVTE WIGKDAMANA NDAGRENGNE SRLLQSKEAT SSSSNASGQN AKSATKYTFI CECFFMTARV LNLGLLKALS DFKHLAQDIS 0501: RGEDNLATLK AMRDQAPSPQ LELDISRMEK ELELSSQEKL CHEAQILRDG DFIQRALSFY RLMVVWLVGL VGGFKMPLPS TCPMEFSCMP EHFVEDAMEL 0601: LIFASRIPKA LDGVPLDDFM NFIIMFMASP EYVRNPYLRA KMVEVLNCWM PRSSSSSSAT STLFEGHQLS LEYLVRNLLK LYVDIEFTGS HTQFYDKFNI 0701: RHNIAELLEY LWQVPSHRNA WRRIAKDEEK GVYLNFLNFL VNDSIYLLDE SLNKILEIKQ IEADMSNTAE WEQRPTQERQ ERTRLFHSQE NIVRIDMKLA 0801: NEDVTMLAFT SEEITAPFLL PEMVERVANM LNYFLLQLVG PQRKSLSLKD PEKYEFRPKQ LLKQIVRIYV NLARGDTVNI FPGAISSDGR SYNEQLFNAG 0901: ADVLRRIGEE GRIIQEFMEL GTKAKAAASE ALDAEAALGE IPDEFLDPIQ YTLMRDPVIL PSSRITVDRP IIQRHLLSDN HDPFNRAHLT SDMLIPDIEL 1001: KAKIDEFVKS HQSKKRTSGE DSSNKERIQT TNSDMLID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)