AT1G59890.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SIN3-like 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1); Has 2059 Blast hits to 826 proteins in 195 species: Archae - 0; Bacteria - 5; Metazoa - 811; Fungi - 648; Plants - 432; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:22044326..22050670 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132607.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1162 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL 0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN 0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS 0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES 0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ 0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK 0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR 0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS 0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER 0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA 1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC 1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSE LSRKKRISRF HMSLNRRLVA LP |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)