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AT2G25320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAF-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G25330.1); Has 73652 Blast hits to 40883 proteins in 2342 species: Archae - 900; Bacteria - 9328; Metazoa - 35691; Fungi - 5783; Plants - 4303; Viruses - 204; Other Eukaryotes - 17443 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AB238681EMBL:CP002685
EnsemblPlants:AT2G25320EnsemblPlants:AT2G25320.1entrez:817070Gene3D:2.60.210.10
GeneID:817070Gramene:AT2G25320.1hmmpanther:PTHR24007hmmpanther:PTHR24007:SF6
HOGENOM:HOG000005822InterPro:IPR002083InterPro:IPR008974InterPro:IPR016024
KEGG:ath:AT2G25320ncoils:CoilOMA:RFTWKVLPfam:PF00917
Pfscan:PS50144PhylomeDB:Q0KKQ1PROSITE:PS50144Proteomes:UP000006548
RefSeq:NP_180104.3SMART:SM00061STRING:3702.AT2G25320.1SUPFAM:SSF48371
SUPFAM:SSF49599TAIR:AT2G25320UniGene:At.14344UniProt:Q0KKQ1
Coordinates (TAIR10) chr2:-:10781951..10788065
Molecular Weight (calculated) 187686.00 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.41
Length 1673 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKQSSSEAVS SSSSSAAADQ SHPSVSSSSS EKPLSSSSIS PAEDLQVGSS RDGSGGAQEI VAVDRPGEYS ALCRWTVESF TRVKAKALWS KYFDVGGYDC
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)