AT3G47890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17667172..17673530 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 177399.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1568 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGQKKKAPAP LDSALIKLEC EKALKSFGRG SYNKAIRLIK DSCSRHQDSA LIHRVQGTIC VKVAAVYEDL ATKQKYLRNA IESARKAVEL SPDSIEFGHF 0101: YANLLYEAAN DGKREYDEVV QECHRALSIE NPIDPAKESL QDETQLKILT PEARIVHVQD ELRSLIQKSN ISSLSTWMNN LGKGEEKFRL IPIRRMAEDP 0201: IESNLVQTRR PNEIKKANKS IEEIRKEVEV RVAAARLLQQ KSECENVGAV DNKGSDATLG SGKRSGERRK HGNARRNGST ADRRDRVKSY WDSMSKEMKK 0301: QLLRVKLSDL KSHFSASKDG NENEIISEAL SFCEANKTWR FWVCCQCSEK FIKSEAYMHH IVQVHMGNVL PKMQMVLPQS FDTERIDMLL TSPWKPLDLS 0401: AAVKWLRSRQ KIQNSEFSEF HAGDNMDDGD DCFKDARNDT SPEKESLGDS CKGCDENDPE EGKLSITFPP PDGWPISDDP ERAKLLEKIR AAFELLIRHK 0501: YLAASHHDKV IQFTLDELQN LASVSQFLNR SLNQSPICIC FLGASQLRKI LKFLQDLSQA CGLSRYSEQS NPNDEFNFGA LCREVTEEIL LDGEDSCLLL 0601: DEKLLGTECI QEIYMGSALH NVAVASSGDI ANGNDVSSGA DGFLSWIFTG PSSEEQVVSW MRTKEEKTNQ GLEIMQHLEK EFYHLQNLCE RKCEHLSYEG 0701: ALQTVEDLCL EESRKRETSA EFTHESYESV LRKRREELNE NDLELVFISS RFELDALTNV LKDAETLNHN QFGYEESYGC TSSQLRDLES GEADEWGMKD 0801: SLHEADSFIE VAIQKQKEQL SAELSRIDAQ MMRNVTGMQQ LELKLGPVSS NDYQIVLLPL VKSYMRAHLE ALAEKDATEK SDAAREALLF ELALDSKKEG 0901: RGRNDNSKHT LEKSKDKKKI KDTRKLKNLK ATIGNDHRFN GDSIEHSLLS VASFGDHSEA DVVSEAIEAL SDEEEEYRRC NELEEEERKL AKTLEYQRRI 1001: ENEAKEKHIA EQKKKYSCSD PMNVTEAVYD DCIENFFDDA DLQEQEKPIN QEKWNKQLDD LEGAKVNING VFPSTNHCVI SDTAKVLDVI SQEVVPNGIA 1101: IQAGVFQSDQ RPGRRGRRQK ASNKLVDGKY QVTLSESEDS KSQRSGTDSE RQSETLRSNG DAGPKTLRQL QAEDDEEERF QADLKRAKLQ SLDVYRGRRN 1201: MTSCLRTSLE DNNDWVLSDV TKESQSSPGV AIFGTGLQNE VGEYNCFLNV IIQSLWNLGM FRAEFLRSST LEHHHFGDPC VVCSLYAIFT ALSTASSETR 1301: KEPVAPSSLR IALSNLYPDS SFFQEAQMND ASEVLAVIFD CLHRSFAQSS SVSDTESAES NSTGSWDCAN RSCIAHSLFG MDVSEQLNCY SCGLESRHLK 1401: YTSFFHNINA SALRTMKVTC AENSFDELLN LVEMNHQLAC DREAGGCGKR NHIHHILTTP PHVFTIVLGW QNTCETVEDI AATLAALNTE IDISIMYRGV 1501: DPKNTYSLVS VVCYYGQHYH CFAYSHEHDQ WIMYDDQNVK VIGSWSDVLS MCKRGHLQPQ VLLYEKKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)