AT3G62900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CW-type Zinc Finger | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CW-type Zinc Finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02990.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23248868..23254810 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 160963.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.17 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||
| Length | 1465 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIVSTSFSA ALRDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST 0101: GTRSPNNLLG ESGNAASSSV PKKAKSGLAS SGNPKKSVKS KKPSSSARME SATKKPCVFS KQNSLKLRIK MVPDGLSTEK NAAAIYSGLG LDVSPSLSLD 0201: NNSLSGSEGM NEEPQGYSPT ESPTSILNVM TSLPVDHCQF LSPLSEDLIR FIEREKSEKG YKYTSPSRLF TASSSAMAYG LEPQKSGEKP SVEKKKKMVE 0301: RSSFSAETNV RSKKGLFDST DAITKESMET NTLYPTFAEK ETASSKLFDA SKENYNGTVR GEMVGDVDRR LWGLTRHKDL GAHHENPKTI SAGSVREDKK 0401: AKLGDNEASG YPRKVGKYKG SKASDSVKKE SSASKAKSGH KVELEHPLRK QKYDQIEQEP PSSSKFKEQQ TSVVFETKLN GQAEKKEVVA VKPQSDSKKA 0501: EDTYKDFFGD IGDSEEEEEQ DVKDLRISEK GLPPLEDMPE KSSLPLVEPQ NVGPEPMLRK LGSDASLPKA NPVIIQEHWV ACDKCGKWRL LPFGVFPEDL 0601: PEKWMCTMLN WLPGVNYCNV PEDETTKALY AMYQIPVPEN QASMQSNPSG PKPQFTQGDD NTKKKKKGFK KIDNGMDKEG ARTAETNKTI QTSSRNGIQN 0701: SQGLGDLAED ERQIHKQKEK GKAVDHLSDE SKSLKANNKR KTDLESSMLA KKMKIESFLF PDESEYGNGR PTSSSGVPIT SADIKPKPRV SSKMPKEEGG 0801: ASDTGNSNST GGIKKRKLRE SHGSRIYSEN ENHERKKARV RKEEKEPSYS QGNGKLEKKN RSHSKIEYAN VQNSIAATSS SSKISDSHKP RNSSREAKCS 0901: PVESVSSSPM RLSNPEKRIS VSKKKEESYD ANVFAAGSLK KFSDGEGEDD GGSDRSQSQM KDKHGSHESS VLDIWDNKGS LKAKERADPS LDANFENGGH 1001: KTLPRKLDHI LGEGKQSSDH HRRSNDSLAK KSGKGSSSRS KEKSQSIRSD SRDGPRHIEK KIYDGSPDSR ADMIVRPNIP KPHDSERIPE RSNIADLASP 1101: SRPPSRGVQG DSSMLSVRKK VDKCSTSAGN NNIQADDVTK ATAQIRRKSE PSPSPLRKEI TSAQAAHNTL KEAKDLKHTA DRLKNSVSNL EHIELYFQAC 1201: LKFLHGAFLL EMSSNESARQ GETMVQSMKI YSSTANLCGF CAHEYEKSKD MGAAALAYKC MEVAYMRVVN SSYTSANRYR NELQTSLQMV PPGESPSSSA 1301: SDVDNVNHPA AVDRVGTSRG ISSPLVAGNH VISAQNRSNL LRLLQFAQDV NLSMDASRKS RVALTACIEN SGEAQQQGEG IISIKSALDY NFQDMEGLLH 1401: GISGFCLDPV IICTKARGVH LTESTLTRFL VDQGRNLAFE FFRCFFYSTK GTIHNGNIIT SYFPI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)