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AT4G00060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotidyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5260eggNOG:KOG1906EMBL:CP002687EnsemblPlants:AT4G00060
EnsemblPlants:AT4G00060.1entrez:828214GeneID:828214GO:GO:0016779
Gramene:AT4G00060.1hmmpanther:PTHR23092hmmpanther:PTHR23092:SF1InParanoid:F4JH01
InterPro:IPR002934KEGG:ath:AT4G00060OMA:RKPYINWPaxDb:F4JH01
Pfam:PF01909PRIDE:F4JH01ProteinModelPortal:F4JH01Proteomes:UP000006548
RefSeq:NP_191917.3SMR:F4JH01STRING:3702.AT4G00060.1SUPFAM:SSF81301
SUPFAM:SSF81631TAIR:AT4G00060tair10-symbols:MEE44UniGene:At.34604
UniProt:F4JH01
Coordinates (TAIR10) chr4:+:21437..27996
Molecular Weight (calculated) 163806.00 Da
IEP (calculated) 7.65
GRAVY (calculated) -0.40
Length 1481 amino acids
Sequence (TAIR10)
(BLAST)
0001: MENRHLPSKF FSSASSMAQN QLIDSLTSHI SLYHSHSSSS SMANTIPNPR SAILRWFSSL SVHQRLSHLT VVDPKFVQIL LQMLGYIRTK GPCSFIILPD
0101: LPSSSDLPSL CFKKSRGLIS RVSESNESER FVFDSTRLFG SGEGERAQDC SCSVNSLDSV VMAEEFLTNV DRFVETMDVL SDGAFLRGEE SDLGSNWVEL
0201: EWLKAKGYYS MEAFVANRLE VSMRLAWLNT NSGKRRGIKL KEKLNAAAAA ANSYWRKKAC VDWWQNLDAA THKKIWTCLF GKSAKSVIYE ILREANQAQQ
0301: GEMWLFNFAS ARKGRTDTSA VSFCDMILEP NSVPRKPITV ASNLSGLYVL QEFASLLILC QNGLVPVHSV FFSSMGTITT LVDCILRKLR GFLMVISIDS
0401: VKSELLDDNT HKCSPSSSSN QKLGSTNRKQ KGKTRNMKKP TPEAKSDKNV NLSTKNGKKD QAKLEFNKSR EAIECKKVPT ASTMINDPEA SAATMEVVPG
0501: LVARKGRTKK KRKEKNKSKK CTSLENNGEV NKSVVNSSAI VKASKCDSSC TSANQHPQEY INAQIIEEHG SFSCERNRSG TCASVNGAAN CEYSGEEESH
0601: SKAETHVISS DLSSVDPAGG PSCENVNPQK SCCRGDRKEK LTMPNERSRT LDEGESHRIH HQRREAGYGF ASSSSEFVSY EWPAVAPMYF SHVSSHLPTA
0701: TDRLHLDVGH NLHPYVRQPF VSTVQHARNP SIEGSHKQVL SRPMPMSLDW PPMVHSNCGL TTAFTCNYDS GILVDIPEQK NKHELGNECE NNWMLEEDFE
0801: VHTVSGVDYN QYFGGGVMYW NPSDHLGTGF SRPPSLSSDD SSWAWHEAEM KRSVDDMVAF SSSYSANGLD SPTAASFCSP FHPLGPPNQP LGYVVPGNEI
0901: STKILQAPPT TIEGAGEEEV SGTLASLSGD VEGNSGDSLP YPILRPIIIP NMSKSEYKRS YDTKSPNVPP TRREHPRIKR PPSPVVLCVP RAPRPPPPSP
1001: VSNSRARRGF PTVRSGSSSP RHWGMRGWFH DGVNWEEPRG AEIVLPWRNK SLAVRPIIQP LPGALLQDHL IAMSQLGRDQ EHPDVAFPLQ PPELLNCPMQ
1101: GESLSLIHGI LNDEIDSFCK QVAAENMARK PYINWAIKRV TRSLQVLWPR SRTNIFGSSA TGLSLPSSDV DLVVCLPPVR NLEPIKEAGI LEGRNGIKET
1201: CLQHAARYLA NQEWVKTDSL KTVENTAIPI IMLVVEVPCD LICSIQSPKD GPDCITVDQD SNGNTEMVGF EDSAAANSLP TNTGNLAIAK SVRLDISFKT
1301: PSHTGLQTTQ LVKDLTEQFP AATPLALVLK QFLADRTLDQ SYSGGLSSYC LVLLITRFLQ HEHHLGRSIN QNLGGLLMDF LYFFGNVFDP RQMRVSVQGS
1401: GIYRNRERGY SIDPIHIDDP LFPTNNVGRN CFRIHQCIKA FSEAYSVLEN ELTCITSTSD SCGKQQLHNL LPKIIPSIIS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)