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AT1G27595.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQASeggNOG:KOG1895EMBL:AK228694EMBL:CP002684
EnsemblPlants:AT1G27595EnsemblPlants:AT1G27595.1entrez:839651GeneID:839651
GO:GO:0005623GO:GO:0071333Gramene:AT1G27595.1hmmpanther:PTHR15245
hmmpanther:PTHR15245:SF20HOGENOM:HOG000082768InterPro:IPR016024InterPro:IPR021850
InterPro:IPR022075KEGG:ath:AT1G27595KO:K06100OMA:HISDAEP
PANTHER:PTHR15245:SF20Pfam:PF12295PhylomeDB:Q0WQK1Proteomes:UP000006548
RefSeq:NP_174080.2STRING:3702.AT1G27595.1SUPFAM:SSF48371TAIR:AT1G27595
UniGene:At.41048UniProt:Q0WQK1
Coordinates (TAIR10) chr1:+:9596475..9602917
Molecular Weight (calculated) 104983.00 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.10
Length 961 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQGEDDTIN GEVAPKRVRH NTNMHLTQQV QTNESLQGPV SINGISSGNH LSDSELTPVE QMVSMIGALL AEGDRGAASL EILISKLHPD MLADIVITSM
101: KHLPSTPPTL ASSVATPADI VVSSSTNTVH SPTPPAQLPF DPILPAGSSF SEVPSLSSSV ADPRRDPRRD PRRMDPRRLN SSVGPTSLPV GEGKESVPVQ
201: KDISTLLSKP VSVSAVTPGA TGSVHSTAVE LSQNKMMGSS GIRIIDPPEC REDLLTVPNE CSYPSKEISS LDVPLSPCRD DEGIRETKYS VPDLDMLSVP
301: DFDQHSPSAS VPDFDQDPPA ASDITAPEES YRELDPVPSY VELTTEQSKT VGKLAIERII ESNRHVFGFD CNKIRMALIA RLIARIDAGS DVATILRELI
401: SVDHREFKGH DLVLHVLYHL HSMAILDTDE SSFYATVYEN FLISVARSFL DALPASDKSF SRLFGEAPHL PDSAINLLDE LCSTRHDPVG KEVCDSERVT
501: QGLGAVWSLI LVRPNERKAC LAIALKCSVH SEEEVRAKAI RLVTNKLYHL TYIAEHVEQF ATDMLLTAVN SETNLSQTAS TAEGIKMEAK SQITLTTESL
601: GSGNSDIPSQ QDLQTSREVS VISISEAQRL ISLFFALCKK KPSLLRLVFE VYGRAPKMVN QAFHRHIPIL IRELGSSYTE LLQIISDPPK GSENLLTYVL
701: QILTQELAPS LDLIATVKHL YETKLKDVSI LIPLLSSLTK DEVLPIFPPL LNLPPEKFQL ALAHILQGSA HTGPALTPAE VLIAIHDIVP EKDGPPLKKI
801: TDACSACFEQ RTVFTQQVLA KALGQMVDRT PLPLLFMRTV IQAIDAFPTL VDFVMEILSK LVRKQIWRLP KLWPGFLKCV SQTKPHSFPV LLELPVPQLE
901: SIMKKFPDLR PSLTAYANQP TIRSSLPNSA LSVLGLDNGQ DSRSQMHPSD ATSSIHGAAL T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)