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AT4G31570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVBXeggNOG:ENOG410Y6G8EMBL:CP002687EnsemblPlants:AT4G31570
EnsemblPlants:AT4G31570.1entrez:829284GeneID:829284GO:GO:0016021
Gramene:AT4G31570.1hmmpanther:PTHR11915hmmpanther:PTHR11915:SF275InParanoid:F4JSP7
KEGG:ath:AT4G31570ncoils:CoilOMA:KCNVVLGPaxDb:F4JSP7
PRIDE:F4JSP7ProteinModelPortal:F4JSP7Proteomes:UP000006548RefSeq:NP_194885.2
STRING:3702.AT4G31570.1SUPFAM:SSF57997TAIR:AT4G31570TMHMM:TMhelix
UniGene:At.31735UniProt:F4JSP7
Coordinates (TAIR10) chr4:+:15297061..15306036
Molecular Weight (calculated) 305931.00 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.56
Length 2730 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDKKKNRADP LAAGRQKLQQ FRQKKADKGT DQKKDSKGST SQGKSSKKSN KSEKHERKPD TSAVSDEAQA PSPVTVGGAT SHVNVAEEVV DSPQTSSDTK
0101: AHEYVSVHGS SSEPDALQPG HTTSNDGSEA RKEVVNSEND ISKSLSTEEE NVKSINSGVA GTVDSLISDP ADSEKGVTHD DASNVDGIFA ASGNIAEGEG
0201: VEVEGGSGNV EKPHQPSSLQ EYIPDVSLIR ARGDQVTDVG EMQEEDMEQF SELSAKAGVD KIATEERQTS YPAVVDSSAS PSHFSEGSSV AFDTVELEGI
0301: NGNFRSQQIR EAAELNEEKP ETSIDFPNNR DHVLSAEPEE SSVAEMASQL QLPESVSISG VLSHEETRKI DTLNLSAELT SAHVHEGRSV SFLQLMDIVK
0401: GLGQDEYQIL CNAREAASST EPGTSSLERL REELFVSSTM EDILHVQLTE QSHLQIEFDH QHNQFVAEIS QLRASYSAVT ERNDSLAEEL SECQSKLYAA
0501: TSSNTNLENQ LLATEAQVED FTAKMNELQL SLEKSLLDLS ETKEKFINLQ VENDTLVAVI SSMNDEKKEL IEEKESKNYE IKHLSSELCN CKNLAAILKA
0601: EVEQFENTIG PLTDEKIHLV EEKYSLLGEA EKLQEELANC KTVVTLQEVE NSNMKETLSL LTRQQTMFEE NNIHLREENE KAHLELSAHL ISETYLLSEY
0701: SNLKEGYTLL NNKLLKFQGE KEHLVEENDK LTQELLTLQE HMSTVEEERT HLEVELREAI ARLDKLAEEN TSLTSSIMVE KARMVDNGSA DVSGLINQEI
0801: SEKLGRSSEI GVSKQSASFL ENTQYTNLEE VREYTSEFSA LMKNLEKGEK MVQNLEEAIK QILTDSSVSK SSDKGATPAV SKLIQAFESK RKPEEPESEN
0901: AQLTDDLSEA DQFVSVNVQI RNLRGLLDQL LLNARKAGIQ FNQLNDDRTS TNQRLEELNV EFASHQDHIN VLEADTIESK VSFEALKHYS YELQHKNHDL
1001: ELLCDSLKLR NDNISVENTE LNKKLNYCSL RIDELEIQLE NLQQNLTSFL STMEEQLVAL QDESERAMMV EHELTSLMSE FGEAVVRLDD CLLRSGTSGA
1101: HTGLDMTKRI SGSVDVAVNV IEDLKEKLEA AYVKHESTSN KYEELKQSFN TLFEKNEFTA SSMQKVYADL TKLITESCGS AEMTSLEVEN VAVFDPFRDG
1201: SFENLLEAVR KILSERLELQ SVIDKLQSDL SSKSNDMEEM TQRSLDSTSL RELVEKVEGL LELESGVIFE SPSSQVEFLV SQLVQKFIEI EELANLLRKQ
1301: LEAKGNELME IEESLLHHKT KIAGLRESLT QAEESLVAVR SELQDKSNEL EQSEQRLLST REKLSIAVTK GKGLIVQRDN VKQSLAEASA KLQKCSEELN
1401: SKDARLVEVE KKLKTYIEAG ERVEALESEL SYIRNSATAL RESFLLKDSL LHRIEEILED LDLPEHFHAR DILEKVEWLA RSANGNSSRP SGWDQKSSDG
1501: GAGFVLSEPW REDVQTGTSS EDDLRIKFEE LKGKFYGLAE QNEMLEQSLM ERNTLVQRWE KLLENIDIPP QLHSMEVENK IEWLASTITE ATHDRDNLQQ
1601: KIDNLEVYCQ SVTTDLEVSQ KQVGDVEGNL QSCVSERVNL SERLESLIGD HESLSARGIH LEVENEKLQN QVKDLHEKLV EKLGNEEHFQ TIEGDLLSLR
1701: YMIDDVIQED GLQDLALASN SENLDGVLRK LIDYYKNLVK SSLPGETDDN VCETRPSDAD VRSGESLGAH GATSHGQHFE LSDSNVVEAT SRDIAVVETP
1801: DVASLTKDLD QALHVQKLTR EERDLYMAKQ QSLVAENEAL DKKIIELQEF LKQEEQKSAS VREKLNVAVR KGKALVQQRD SLKQTIEEVN AELGRLKSEI
1901: IKRDEKLLEN EKKFRELESY SVRVESLESE CQLLKIHSQE TEYLLQERSG NLSMTLNALN SIDIGDEGDI NDPVMKLQRI SQLFQTMSTT VTSAEQESRK
2001: SRRAAELLLA ELNEVQETND SLQEDLSKFT YEIQQLSREK DAAEAAKVEA ISRFENLSAV SNEEKNKLYA QLLSCGTSVN SLRKILAGTN SCLADIFIMD
2101: MEFLHHLKAN MELCAKKTGT DLSGLPQLST ENLVDKEIFA RLSAAWSNIN LHETSSGGNI AEICGSLSQN LDQFVVGVSH LEEKVSKHLA TWHDQINIVS
2201: NSIDTFFKSI GTGTDSEVAA LGERIALLHG ACSSVLVEIE RRKAELVGND DFNMSLHQVD EDFSSMESVR SMVNRLSSAV KELVVANAET LERNEKEMKV
2301: IIANLQRELH EKDIQNNRTC NELVGQVKEA QAGAKIFAED LQSASARMRD MQDQLGILVR ERDSMKERVK ELLAGQASHS ELQEKVTSLS DLLAAKDLEI
2401: EALMQALDEE ESQMEDLKLR VTELEQEVQQ KNLDLQKAEA SRGKISKKLS ITVDKFDELH HLSENLLAEI EKLQQQVQDR DTEVSFLRQE VTRCTNEALA
2501: ASQMGTKRDS EEIQTVLSWF DTIASLLGIE DSLSTDADSH INHYMETFEK RIASMLSEID ELRLVGQSKD VLLEGERSRV AELRQKEATL EKFLLEKESQ
2601: QDISTSSTSE IVEVEPLINK WTKTSIPSQV RSLRKGNMDQ VAISIDADQT DQSGSLEEDD DKDHSLRQES FLDSQDPSLT WSMVYGQTLF IHGSRSVVSC
2701: DRTLMRQPAL RLGIMLYWAI LHALLAAFVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)