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AT1G10450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SIN3-like 6
Curator
Summary (TAIR10)
Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).
Computational
Description (TAIR10)
SIN3-like 6 (SNL6); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 5 (TAIR:AT1G59890.1); Has 2418 Blast hits to 1013 proteins in 213 species: Archae - 0; Bacteria - 30; Metazoa - 894; Fungi - 728; Plants - 479; Viruses - 2; Other Eukaryotes - 285 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5602eggNOG:KOG4204EMBL:AC007067EMBL:CP002684
EnsemblPlants:AT1G10450EnsemblPlants:AT1G10450.1entrez:837584Gene3D:1.20.1160.11
GeneID:837584Genevisible:Q9XIK6GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT1G10450.1hmmpanther:PTHR12346hmmpanther:PTHR12346:SF8
HOGENOM:HOG000030343InParanoid:Q9XIK6IntAct:Q9XIK6InterPro:IPR003822
InterPro:IPR013194InterPro:IPR031693iPTMnet:Q9XIK6KEGG:ath:AT1G10450
KO:K11644PaxDb:Q9XIK6Pfam:PF02671Pfam:PF08295
Pfam:PF16879Pfam:Q9XIK6Pfscan:PS51477PhylomeDB:Q9XIK6
PIR:C86238PRIDE:Q9XIK6PRO:PR:Q9XIK6PROSITE:PS51477
ProteinModelPortal:Q9XIK6Proteomes:UP000006548RefSeq:NP_172515.2SMART:SM00761
SMR:Q9XIK6STRING:3702.AT1G10450.1SUPFAM:SSF47762TAIR:AT1G10450
tair10-symbols:SNL6UniGene:At.42179UniProt:Q9XIK6
Coordinates (TAIR10) chr1:+:3432313..3437979
Molecular Weight (calculated) 128549.00 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.73
Length 1122 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)