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AT5G15020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SIN3-like 2
Curator
Summary (TAIR10)
Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).
Computational
Description (TAIR10)
SIN3-like 2 (SNL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1); Has 7665 Blast hits to 4944 proteins in 497 species: Archae - 53; Bacteria - 740; Metazoa - 2798; Fungi - 1391; Plants - 712; Viruses - 253; Other Eukaryotes - 1718 (source: NCBI BLink).
Protein Annotations
BioGrid:16631eggNOG:COG5602eggNOG:KOG4204EMBL:AK118953
EMBL:AL391146EMBL:CP002688EnsemblPlants:AT5G15020EnsemblPlants:AT5G15020.1
entrez:831354ExpressionAtlas:Q9LFQ3Gene3D:1.20.1160.11GeneID:831354
Genevisible:Q9LFQ3GO:GO:0000118GO:GO:0000122GO:GO:0000785
GO:GO:0001106GO:GO:0005829GO:GO:0006351GO:GO:0016575
hmmpanther:PTHR12346hmmpanther:PTHR12346:SF8HOGENOM:HOG000030343InParanoid:Q9LFQ3
IntAct:Q9LFQ3InterPro:IPR003822InterPro:IPR013194InterPro:IPR031693
iPTMnet:Q9LFQ3OMA:CEEICSTPaxDb:Q9LFQ3Pfam:PF02671
Pfam:PF08295Pfam:PF16879Pfam:Q9LFQ3Pfscan:PS51477
PhylomeDB:Q9LFQ3PIR:T51447PRIDE:Q9LFQ3PRO:PR:Q9LFQ3
PROSITE:PS51477ProteinModelPortal:Q9LFQ3Proteomes:UP000006548RefSeq:NP_197006.2
SMART:SM00761SMR:Q9LFQ3STRING:3702.AT5G15020.1SUPFAM:SSF47762
TAIR:AT5G15020tair10-symbols:SNL2UniGene:At.43354UniProt:Q9LFQ3
Coordinates (TAIR10) chr5:-:4859408..4865569
Molecular Weight (calculated) 155127.00 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.75
Length 1367 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRVS AIDSYDLLSH
1101: ILYERILSAK TYCSGSEMKL RNTKDTCSPD PYARFMNALF SLLNGSAENS KFEDECRAII GNQSYVLFTL EKLIYKLVKQ LQAVVADDMD NKLLQLYEYE
1201: NSRRPGRVFD SVYYENARIL LHEENIYRLE CSSSPSRLSI QLMDNIIEKP DAYAVSMEPT FTSYLQNEFL SNSSGKKELQ DIVLQRNMRG YNGLDDLAVA
1301: CKAMEGVQVI NGLECKMSCS SYKISYVLDT EDFFHRKKKQ KKSNNLSLAK LSQNRIARFH KFLSASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)