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AT5G48120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.970
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 594 Blast hits to 356 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 233; Plants - 48; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNMZeggNOG:KOG1967EMBL:AB017064EMBL:AB023039
EMBL:AK226792EMBL:CP002688EnsemblPlants:AT5G48120EnsemblPlants:AT5G48120.1
entrez:834864Gene3D:1.25.10.10GeneID:834864Genevisible:Q0WVF8
GO:GO:0005634GO:GO:0005737Gramene:AT5G48120.1hmmpanther:PTHR12891
HOGENOM:HOG000084458InParanoid:Q0WVF8InterPro:IPR011989InterPro:IPR016024
InterPro:IPR024687iPTMnet:Q0WVF8KEGG:ath:AT5G48120KO:K15075
OMA:KGKECILPaxDb:Q0WVF8Pfam:PF12460Pfam:PF14500
PhylomeDB:Q0WVF8PRIDE:Q0WVF8PRO:PR:Q0WVF8ProteinModelPortal:Q0WVF8
Proteomes:UP000006548RefSeq:NP_199623.2STRING:3702.AT5G48120.1SUPFAM:SSF48371
TAIR:AT5G48120UniGene:At.29864UniProt:Q0WVF8
Coordinates (TAIR10) chr5:-:19508210..19514774
Molecular Weight (calculated) 124262.00 Da
IEP (calculated) 5.92
GRAVY (calculated) 0.24
Length 1134 amino acids
Sequence (TAIR10)
(BLAST)
0001: MMVEPNQLVQ HLETFVDTNR SSSQQDDSLK AIASSLENDS LSITQLVREM EMYLTTTDNL VRARGILLLA EILDCLKAKP LNDTIVHTLV GFFSEKLADW
0101: RAMCGALVGC LALLKRKDVA GVVTDIDVQA MAKSMIQNVQ VQALALHERK LAFELLECLL QQHSEAILTM GDLLVYAMCE AIDGEKDPQC LMIVFHLVEL
0201: LAPLFPSPSG PLASDASDLF EVIGCYFPLH FTHTKDDEAN IRREDLSRGL LLAISSTPFF EPYAIPLLLE KLSSSLPVAK VDSLKCLKDC ALKYGVDRMK
0301: KHYGALWSAL KDTFYSSTGT HLSFAIESLT SPGFEMNEIH RDAVSLLQRL VKQDISFLGF VVDDTRINTV FDTIYRYPQY KEMPDPSKLE VLVISQILSV
0401: SAKASVQSCN IIFEAIFFRL MNTLGIVEKT STGDVVQNGN STVSTRLYHG GLHLCIELLA ASKDLILGFE ECSPTSGCAN SGCSMVKSFS VPLIQVFTSA
0501: VCRSNDDSVV DVYLGVKGLL TMGMFRGGSS PVSRTEFENI LVTLTSIITA KSGKTVVWEL ALKALVCIGS FIDRYHESDK AMSYMSIVVD NLVSLACSSH
0601: CGLPYQMILE ATSEVCSTGP KYVEKMVQGL EEAFCSSLSD FYVNGNFESI DNCSQLLKCL TNKLLPRVAE IDGLEQLLVH FAISMWKQIE FCGVFSCDFN
0701: GREFVEAAMT TMRQVVGIAL VDSQNSIIQK AYSVVSSCTL PAMESIPLTF VALEGLQRDL SSRDELILSL FASVIIAASP SASIPDAKSL IHLLLVTLLK
0801: GYIPAAQALG SMVNKLGSGS GGTNTSRDCS LEEACAIIFH ADFASGKKIS SNGSAKIIVG SETTMSKICL GYCGSLDLQT RAITGLAWIG KGLLMRGNER
0901: VNEIALVLVE CLKSNNCSGH ALHPSAMKHA ADAFSIIMSD SEVCLNRKFH AVIRPLYKQR CFSTIVPILE SLIMNSQTSL SRTMLHVALA HVISNVPVTV
1001: ILDNTKKLQP LILEGLSVLS LDSVEKETLF SLLLVLSGTL TDTKGQQSAS DNAHIIIECL IKLTSYPHLM VVRETSIQCL VALLELPHRR IYPFRREVLQ
1101: AIEKSLDDPK RKVREEAIRC RQAWASITSG SNIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)