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AT5G64420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA polymerase V family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITTReggNOG:ENOG41100HUEMBL:AB008268EMBL:AB025640
EMBL:CP002688EnsemblPlants:AT5G64420EnsemblPlants:AT5G64420.1entrez:836563
GeneID:836563GO:GO:0003677GO:GO:0003887GO:GO:0005829
GO:GO:0006351Gramene:AT5G64420.1hmmpanther:PTHR13213hmmpanther:PTHR13213:SF2
HOGENOM:HOG000083237InterPro:IPR007015InterPro:IPR016024KEGG:ath:AT5G64420
KO:K02331ncoils:CoilOMA:PRIHSLWPANTHER:PTHR13213
Pfam:PF04931PhylomeDB:Q9FGF4Proteomes:UP000006548RefSeq:NP_201247.1
STRING:3702.AT5G64420.1SUPFAM:SSF48371SwissPalm:Q9FGF4TAIR:AT5G64420
UniGene:At.27838UniProt:Q9FGF4
Coordinates (TAIR10) chr5:+:25756416..25761122
Molecular Weight (calculated) 146123.00 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.36
Length 1306 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSKKRSNDD STELVENDNL PDSSIVKKKK SKTEKMNTVA NYDSDTAAAA AEVPGVASSG KDMEKKKMRK ASDKQRRLEA ALKKNNGVGA SRPKPIPVAV
0101: NSNSDEADDE SLPSAAASSS SLPLNYFTDL ASSDASVREA AAESLVLRLQ EIQKQYEMLP DKESVDGGLM LEAEKNDGLD NCAPHLRYAL RRLIRGVSSS
0201: RECARQGFAL GLTLPVSVIS SINVESLLNL IADSLSVSSS MTGQDIKECL LGRLFAYGAL ARSGRLIEDW QSDKDSPIIK EFTNALIGLA AKKRYLQEPA
0301: VHILLDFVDK LPTEPVVTHV MEAPELYKWF EQATEVGNPD ALLLALKLHE KVSVDHPIFS KLLPVPFSSG KFFSADHLTA IGNCLKESTF CQPRVHSLWP
0401: VIVDMLLPEA VVQSEDVVSV SSSSKKQKRN RKSNPVEEEA TNNIRNFCEV FMEGDLLSST HVRKHLAFDI LLLLLPKLPA SFIQHVLSLK FVQCLMDILS
0501: TKDSWLHKVA THFLVELMDW VKDDDTKRVA VTMALQKHSE GKFDNITRTK TVKVLAAELE TEDGCTLYLQ NLMNLFVDEQ HVPEESSNMK WSLEPCSLNS
0601: DQSQTTDDNS DNGSNEEKDS VGTTGNSDVL KSWVIESLPG ILKHAKLSPE AKLRLQKQIL KFLAVQGLFL ASLGTEVTSF ELQEKFKWPK TATPAALCQM
0701: CIEQLQLLLS NSQKIEKPLS KGNALEQPDD PVSYFMKFLS TLQNIPSVSL FRSLNEADEK AFKELQETES KLLKEERNCG LSTDPNKFHA LRHLVVQLLL
0801: QILLHPGEFS EAATELSVCC DKAFSSLDLL KSDGQGEADD EEEPAVMDVL VDTLLSLLPH SSAPMRSSIE QVFKYFCQDV TNDGLLRMLR VIKKDLKPSR
0901: HQEDQDSDDL DDDEEDCLAI EDAEEENEEM GETGESDEQT DDSEAVTGVV PMAVDREVPE NSDDSDDDDG MDDDAMFRMD TYLAQIFKEK RNQAGGETAQ
1001: SQLVLFKLRV LSLLEIYLHE NSDKPQVMTV YLNLVQAMLN PSTAESSLPL LQRIWGIIQK KIFKAKEFPK DESMEFSALA SLLEKNLKLA AKPFKSKKSG
1101: VDPSKKKQSA AWNRYKMITH LGQNSTYWVM KIIDSRKFSE TELEKILDVF RSAVTGYFDS RKSQLKIDFL EEVFRRRPWI GHQLFGFLLE ASVNANVEFR
1201: RLEALDLITE TLRSLIPINE NTQADSRKTM TTHLKELILL IKELVGNMPE AKVRRAQVRK FCGRIFQMVS SLKLTKSFLK GLGQDGRTAC EDAFGDLFLN
1301: LKNTEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)